Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2398 ATGGAATCGAAGTTGGATCTGATAGACCGATCGCTCAATGACAGTTATTCCAACTACGCCCGCGAGGCGCTGGACGAATTGCCTGATAGTTTCACCATTACCGATCCTTCTATCCCTGGTCACCCAATTGTGTTTGCAAGCCGAGGGTTCTTGAAAATGTCAGGGTACTCGAAAGATGAAGTAACTGGCAAGAATGGTGGGGTTTTTCAAGGACCAGAGACTTGTAGAAGATCGGTGATGGAAATTCGAGAGGCAATACGGGAAGAGAGAAGCATTCAGATCAATTTGTTGAATTATCGTAAAGATGGGAGACCCTTCTGGATGTTGTTTCACATGAGCCCCGTGTTTAGCAAAGAGGATGGGAGGGTTATTCACTTCGTTGCAGTTCAGGTACCAATATCGAGAAAACGGAGGTGTTCTGGATGTGAGTTTGGAAGAGATGGAGTTAATGTCTGTGAGGACGGGTCTAGGGTGCAGGATTATATATCCGGATCTTGTCGGAAGGAAGTATGCTCGGAGTCTTCGTTGGTACTTGGTCGTGTTTTGTCCCCGGATCAAGTGTTAGAACATGATAGAGAATCAGAGGGTGAAGAGTTGTGTGAGGCAAGTGATGTTGAGAAGAGAAGAGCTGTGACTGCCATGGACAACATCTTCTCTGTACTAATCCACTATAGCCAGTTAACTATAACTAAAAGATTGGTGTGTAGAAAGAGACACAGCATGCCTAACGCTTGTCTTCTTAGCTCATCCTTGATTATTGCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACAAATCCACAATTACATCACATGCCTATTGTGTATGCCAGTGATGCATTCTTGAAATTGACAGGCTATGCAAGAGACGAAGTATTGGGGCGCAATTGTAGATTTCTAAGTGGAGAGGATACTGAAGCCTCAACTTTATGCCTTATAAGGGAGAGCATTAAAACTGAACGACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGATCGTTTTGGAATGTTCTTCACATATCACCAGTTCGTGATGCTTCTGGCAAGCTAGCATACTTTGTGGAAATTCAAATAGAAGAAGGGGGGTGTAAGAAGCAGGAGAAACAGGGCTTGAGCCCTGAGGCGAGGCAGCTTAGTGTGGTTGGTGCTGTCAAGGTTGCTGTCAGGAGTTCATCAATGACCGTTGGATCTTCAAAGTCATAG 1212 0.4406 MESKLDLIDRSLNDSYSNYAREALDELPDSFTITDPSIPGHPIVFASRGFLKMSGYSKDEVTGKNGGVFQGPETCRRSVMEIREAIREERSIQINLLNYRKDGRPFWMLFHMSPVFSKEDGRVIHFVAVQVPISRKRRCSGCEFGRDGVNVCEDGSRVQDYISGSCRKEVCSESSLVLGRVLSPDQVLEHDRESEGEELCEASDVEKRRAVTAMDNIFSVLIHYSQLTITKRLVCRKRHSMPNACLLSSSLIIALGRIKQSFVLTNPQLHHMPIVYASDAFLKLTGYARDEVLGRNCRFLSGEDTEASTLCLIRESIKTERPCTVRILNYRKDKRSFWNVLHISPVRDASGKLAYFVEIQIEEGGCKKQEKQGLSPEARQLSVVGAVKVAVRSSSMTVGSSKS 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2398 403 SUPERFAMILY PYP-like sensor domain (PAS domain) 264 359 IPR035965 -
Bisa11g2398 403 Gene3D PAS domain 17 139 - -
Bisa11g2398 403 ProSiteProfiles PAS repeat profile. 274 320 IPR000014 -
Bisa11g2398 403 FunFam Protein TWIN LOV 1 isoform D 30 223 - -
Bisa11g2398 403 SMART pac_2 93 136 IPR001610 -
Bisa11g2398 403 SMART pac_2 324 366 IPR001610 -
Bisa11g2398 403 Pfam PAS domain 29 134 IPR000014 -
Bisa11g2398 403 Pfam PAS domain 261 360 IPR000014 -
Bisa11g2398 403 PANTHER PROTEIN TWIN LOV 1 1 393 - -
Bisa11g2398 403 SUPERFAMILY PYP-like sensor domain (PAS domain) 28 130 IPR035965 -
Bisa11g2398 403 SMART pas_2 18 91 IPR000014 -
Bisa11g2398 403 SMART pas_2 249 318 IPR000014 -
Bisa11g2398 403 Gene3D PAS domain 261 401 - -
Bisa11g2398 403 NCBIfam PAS domain S-box protein 23 129 IPR000014 -
Bisa11g2398 403 NCBIfam PAS domain S-box protein 274 358 IPR000014 -
Bisa11g2398 403 CDD PAS 270 357 IPR000014 -
Bisa11g2398 403 ProSiteProfiles PAS repeat profile. 16 89 IPR000014 -
Bisa11g2398 403 CDD PAS 27 133 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2398 Bisa-ChrBisa11 48531227 48534851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2398 17 362 AGC Kinase Gene Family AT5G58140 31.250 3.91e-58 202