Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2395 ATGGCGGCGGGTGGGAAACTTTACGGGGCTCCCAATATCACACTTCTGCTCCAAAACGAAAGGCTTCCTTCCTCTTCTGATGTTCTCGACTCTCTCTGGCCTCACGCCTCTAACGGCACTTTCCCAGGTTCAAAATCAATGGTTAATTTTGAGAGCGTGAGTGGGTGCACAGTGACAGACAGGCCATATATGCAAGGCGTGGAGAAAGAAGAGAACGGGGAAGAGGAGTACGAGGCGTGCTTTCATCAAGCGGGGAAGAAGAGGAGGCTGACGATCGAGCAGGTACAGTTTCTGGAGAAGAACTTCGAGGTGGAGAACAAGCTGGAACCAGAGAGGAAGGTGCAGCTGGCGAAGGAGCTGGGGCTGCAACCGAGGCAAGTGGCCATATGGTTCCAGAACCGAAGGGCCAGGTTCAAGACCAAGCAGCTCGAGAAAGACTATGGCACCTTGAAAGCCAGCTACGACAAACTCAAGAGCGACACTGACACTCTTCTCAAGGAGAACGACAAGTTAAAAGAAGAGGTGAATTCCCTGAAGAAGAGGCTAATCGGAAGAGAAAAAGAGAAAGAAGATTCTCACAAGTCTGCTGCTAAGGATGGGGAAGACGCGGAAGGTGTGAATTCACCGTCACCGCAGAGAGAGCGACCTGGATCTTCGGTTTTGTCAGAGAAGGGGTCCAAAGTGGCAGTAGATCCAGTGGGAACAATAATGTGCAAGCAGGAAGACGCGAATTCGGCGAAAAGCGATGTGTTCGATTCGGAGGACGCGGAGGCGAACCATCAATCCTCGATGTTGGAGCCGGGAGACTCGTCGCACGCGTTCGAGCCGGACCACTCCGATTTCTCGCAGGACGAAGATGATAATCTGAGCCGCAACCTCCTGAGCCTTCCGTGCTGCTTCCCGAAGGTCGAAGATGGATGCTACGAGGACCCTCCTGAAACTTCCTGTAATAACTTTGGCTTCCCTGCTGAAGATCAAACCTTCTGTTTTTGGCCTTATTGA 1002 0.521 MAAGGKLYGAPNITLLLQNERLPSSSDVLDSLWPHASNGTFPGSKSMVNFESVSGCTVTDRPYMQGVEKEENGEEEYEACFHQAGKKRRLTIEQVQFLEKNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDKLKSDTDTLLKENDKLKEEVNSLKKRLIGREKEKEDSHKSAAKDGEDAEGVNSPSPQRERPGSSVLSEKGSKVAVDPVGTIMCKQEDANSAKSDVFDSEDAEANHQSSMLEPGDSSHAFEPDHSDFSQDEDDNLSRNLLSLPCCFPKVEDGCYEDPPETSCNNFGFPAEDQTFCFWPY 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2395 333 SUPERFAMILY Homeodomain-like 77 143 IPR009057 -
Bisa11g2395 333 MobiDBLite consensus disorder prediction 182 201 - -
Bisa11g2395 333 MobiDBLite consensus disorder prediction 242 288 - -
Bisa11g2395 333 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Bisa11g2395 333 MobiDBLite consensus disorder prediction 182 226 - -
Bisa11g2395 333 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Bisa11g2395 333 SMART HOX_1 84 145 IPR001356 GO:0003677
Bisa11g2395 333 Gene3D - 143 184 - -
Bisa11g2395 333 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 65 245 IPR045224 GO:0003700
Bisa11g2395 333 Coils Coil 154 188 - -
Bisa11g2395 333 CDD homeodomain 86 142 IPR001356 GO:0003677
Bisa11g2395 333 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Bisa11g2395 333 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Bisa11g2395 333 MobiDBLite consensus disorder prediction 271 287 - -
Bisa11g2395 333 Pfam Homeobox associated leucine zipper 141 182 IPR003106 GO:0006355|GO:0043565
Bisa11g2395 333 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Bisa11g2395 333 Gene3D - 80 142 - -
Bisa11g2395 333 FunFam Homeobox-leucine zipper protein HAT5 79 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2395 Bisa-ChrBisa11 48411544 48413656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2395 43 187 Homeobox Transcription Factor Family AT3G01470 53.793 2.14e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa11g2395 Homeodomain 1.3e-15 CL0123