Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2348 ATGTCAAGCCCTGGCGGGATACTTAACGCGTTAGCTACAGCACTGCACGGGTCGATACGCACAGCGCCTAGTATCCATCGTTTACGGCTAGGACTACTGGGGTATCTAATCCCATTCGCTCCCCTAGCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTTCCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCAGTGGCAGTAAGCGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAACGATCGTCAACAAGGGCGTTCTAGTGCGTTGATTTCCAATCCTAGCAGGAAAAGGAGGGAAACGGATACTCAATTTCAAGTGAGTAAACAGAATTCCATACTCGATCTCCTAGATACATATAGAATTCTGTGGAAAGCCGTATTCGATGAAAGTCGTATGTACGGCTTGGAGGGAGATCTTTCATATCTTTCGAGATCCACCCTACAATATGGGGTCAAAAAGCCAAAATAA 714 0.465 MSSPGGILNALATALHGSIRTAPSIHRLRLGLLGYLIPFAPLAFVSQCQCRPSRVLSPLVFFPISTHFTAPPEIPSAPTSGSKRDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVNDRQQGRSSALISNPSRKRRETDTQFQVSKQNSILDLLDTYRILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKPK 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2348 237 NCBIfam 30S ribosomal protein S12 78 169 IPR005679 GO:0003735|GO:0006412|GO:0015935
Bisa11g2348 237 MobiDBLite consensus disorder prediction 164 185 - -
Bisa11g2348 237 Pfam Ribosomal protein S12/S23 82 165 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa11g2348 237 PRINTS Ribosomal protein S12 signature 130 147 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa11g2348 237 PRINTS Ribosomal protein S12 signature 80 95 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa11g2348 237 PRINTS Ribosomal protein S12 signature 147 163 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa11g2348 237 PRINTS Ribosomal protein S12 signature 163 175 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa11g2348 237 PRINTS Ribosomal protein S12 signature 95 110 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa11g2348 237 PRINTS Ribosomal protein S12 signature 111 130 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa11g2348 237 SUPERFAMILY Nucleic acid-binding proteins 82 169 IPR012340 -
Bisa11g2348 237 CDD Ribosomal_S12 92 163 IPR005679 GO:0003735|GO:0006412|GO:0015935
Bisa11g2348 237 Gene3D - 66 185 IPR012340 -
Bisa11g2348 237 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 91 171 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bisa11g2348 237 ProSitePatterns Ribosomal protein S12 signature. 96 103 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2348 Bisa-ChrBisa11 47715044 47719007 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2348 65 152 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 36.458 2.60e-08 49.7