Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2342 ATGGTGTCTTCACGAGGAGAAGCTAGCCCTGGACAACCTCAGATGATGGGTGGAGGTGCTCAGAAACTAACAACAAATGATGCCTTGCAATATCTAAAGGCAGTCAAGGAAATGTTTCATGATAAGAGGGAAAAGTATGATGACTTTCTGGAAGTCATGAAAAATTTCAAAGCACAAAGAATTGATACTGCGGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCACAAGGATCTAATTTTGGGATTTAATACCTTCCTGCCAAAAGGATATGAAATCACGCTTCCACTGGAGGATGAACAACCTCCCCAGAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAAATTAAGACTCGGTTTCAAGGTGATGATCATGTGTACAAGTCTTTTCTAGACATATTGAATATGTATAGAAAAGAAAACAAGTCTATCACTGAGGTTTATCAGGAGGTTGCTGCACTTTTCCAAGACCACCAAGACCTTCTTGTTGAGTTCACTCACTTTCTTCCAGATGCATCAGCTGCAGCTTCTGCACATTATGCTCAACCTGCCCGGAATTCTTTGCTACGAGATAGGAGCTCTGCAATCCCAACCATGCGGCAAATGCATATTGACAAGAGGGAAAGGACCATAGCTTTGCATGATCGTGATCTTAGTGTTGATCGTCCTGATCCAGATCATGACAGAGATTTGATAAGGTCAGAAAAGGAGCTGAGGAGGCGTGGTGAGAAGGAAAAGGACCGTAGAGAAGATAGAGAGAGGAGAGAGCGGGAGCGGGATGATAGAGATTATGAGCATGATAATAGTCGGGACTTCAACATCCAGCATTTCCCCCACAAACGGAAGAATGGTGGTAGGGCTGATGATTCTGGTGCTGAACCTTTGCATCAAGGTGACACTGATGAAAATTTTGGCCTACGCCGTATGTCATCCCCTTGTGATGATAAAAGTTCTGTGAAAAGTATGTATAGTCAGGAGTTTGCTTTCTGTGATAAAGTCAAGGAGAGATTACGGAATCCTGCAGATTACCAGGAATTTTTGAAGTGCCTACATATCTATAGCAGGGAAATAATTACTCGACAAGAATTGCAGACATTGGTAGGTGATGATTTACTGGGAAAATATCCTGACCTTATGGAGGGTTTTAATGAATTTTTGGCACGATATGGATTCCTTGCTGGCGTCATGAATAAAAAGTCCATATGGAGTGAAGGGCATGCACCAAAATCGGCAAAGGCTGAGGATAGGGATAGAGATAGAGATCGTGATCGAGGTCAGGATGATGGGGTTAAAGAGAGGGATCGTGAATACCGAGAAAGGGACAAACCTGCTACAATTGTTAACAGGGATGTTTCAGGTTCTAAGATGTCTATATTTCCCACCAAGGATAAGTATCTGGCAAAACCTATAAATGAGCTTGACCTTTCTAACTCTAGTCAGAGAACAGAGCTTGGTGCTGAAGTATTGAATGATCATTGGGTGTCTGTGACATCAGGAAGTGAAGATTATTCGTTTAAGCACATGCGCAAAAACCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTGGAGCTTGTTTGCAAGCAATTTTGCATTCGCCCTATATTTGAACTTGATATGTTGTTGGAGTCTGTGAATGTAACAACCAAGCGAGTAGAAGAGCTCTTAGAAAAGATCAATAATAATATAATTAAAGGAGACAGTCCAATTCGTATAGAGGAGCACTTAACAGCTTTAAATCTAAGGTGCATTGAACGATTATATGGTGACCATGGGCTTGATGTAATGGATGTGTTAAGAAAGAATGCACCTTTAGCTTTGCCAGTCATACTAACCCGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGTCGTGCTGATTTCAATAAAGTTTGGGCTGAAATATATGCTAAGAACTATCACAAGTCCCTTGATCATAGGAGCTTCTACTTTAAGCAACAAGATACAAAAAGCCTGAGCACAAAAGCCTTATTGGCAGAAATTAAAGAAATTAGTGAGAAGAAACGTAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGCCTATTCTTCCCAATTTGGAATACGAGTACACTGATCCAGATATTCACGAAGATCTGTATCAGCTCATAAAATATTCGTGTGGAGAAGTTTGTACAACCGAGCAGTTAGATAAAGTTATGAAGATTTGGACGACTTTTATAGAGCCCATGCTTGGTGTTCCTTCTCGACCGCAGGGTGCTGAGGATACAGAGGATGTTGTCAAGGCTAAGAATAGTTCTGTCAAAAGTGGCACTGCAAGTGTTGCAGAGAGTGATGTGAGTCCAGGTGGTGGTGCTACCATAATGAATCCTAAACAATTAAATACTTCTAGAAATGGGGATGAGAGCATTCCATTAGAACAGCCAATCTCTTGCAAAGCATGGCATATAAATGGGGAAAGTGCAGTCAAAGAAGACAACTGTCTTGATGCAGACCGTACTACACGTAAAACTGATACTTCGAGCAGTAGTACACAGCATGGTAAAATGCATAATAGTGCGTCCATGCCCGATGGAGGATCAGGAGTCACTAAGCAAGATCATTCCAATGAACGGTTAGTGAATGCTAATGCCTCACTTGCCTCTGGAATAGAGCACTGTAATGGAAGAGCGAGTATTGATAACGCATCAGGGCTTACTGGTACACAATCTCGACCTGTTGTTGAGGGAGGACTTAATTTACCTTCATCAGAGGGTGGTGATTCTACTAGACCAGGTACATCCACAAATGGGGCCCTCACTGAAGGCACCAAAGTTCAAAAATACCAAGAAGAATCTGTTGGGCACTTTAAAAGTGAGAGAGAAGAGGGTGAATTATCTCCAAATGGAGATTTTGAGGAGGATAACTTTGCAGTCTACAGAGATGCTGGTTTGGAGGCAACGAGTAAAGGAAAGGATGGTAGTATGATTCAGCAATACCAAAATAGACATGGGGAAGAAGTTTGTGGTGAGGCACGAGGAGAAAATGATGCTGATGCTGATGATGAAGGTGAAGAAAGTCCTCACAGGTCATTAGAGGACAGTGAGAATGCTTATGAAAATGGCGATGTTTCTGGTAGTGAGTCTGCTGATGGTGAGGAGTGTTCTCGGGAAGAGCATGAGGATGGAGAAAATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGGATGGCAGATGTGAATGATGTTGAAGGCGATGGAACCCTGTTGCCATTTTCAGAACGCTTTTTACTAACTGTAAAGCCTCTGGCAAAGTATGTTCCCCCCGTGTTGCATGAGAAAGAAAGAAATTCTCAGATTTTTTATGGAAATGATTCCTTTTATGTTCTTTTCAGACTTCACCAGACATTATATGAGAGGATACAATCAGCAAAGATCAACTCTTCTTCTGCTGAAAGAAAGTGGAGGGCTTCAAATGATACAAGCTCTACTGATCAATACGGCAGGTTCATGAATGCCCTTTATAGTTTACTTGATGGTTCTTCTGATAATACAAAATTTGAGGATGACTGCCGAGCCATTATTGGAACTCAATCTTATGTCTTGTTCACTTTGGACAAGCTGATATATAAACTAGTTAAACAGCTTCAAGCTGTTGCTGCTGATGAGATGGATAACAAGCTTCTTCAACTTTATACATATGAGAAGTCAAGAAAACCAGGGAGATTTGTTGATGTAGTTTATCATGAAAATGCCCGTGTTCTTCTTCATGATGAAAACATATATCGAATTGAATGTTCATCCACACCAACCCGATTATCTATTCAACTGATGGACTATGGACATGATAAGCCTGAATTGACTGCGGTGTCTATGGACCCAAATTTTTCAGCCTATCTGCACAATGACTTCCTCTCTGTCGTTCCCGACAAAAAGGAGAAGTCAGGAATTTTCTTGAAGAGGAATAAACGCAGATATGTATGTGGTGATGAATATTCAAGCCAGGCCTTGGAAGGACTACAAGTTAATAATGGTCTGGAGTGTAAAATAGCTTGCAATTCATCTAAGGTTTCATATGTTTTAGATACCGAAGACTTTTTATTTAGAATGAGAAAGAAAAGGAAAACCTTGTGTCAGAACAGCTCATGCCATGAGCAGGCAAAGTCTTCGAACATTTGTTCAAGCAGAGCACAGAGGTTTCGCAGATTGTTTCCTGTTACATGA 4218 0.4118 MVSSRGEASPGQPQMMGGGAQKLTTNDALQYLKAVKEMFHDKREKYDDFLEVMKNFKAQRIDTAGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAALFQDHQDLLVEFTHFLPDASAAASAHYAQPARNSLLRDRSSAIPTMRQMHIDKRERTIALHDRDLSVDRPDPDHDRDLIRSEKELRRRGEKEKDRREDRERRERERDDRDYEHDNSRDFNIQHFPHKRKNGGRADDSGAEPLHQGDTDENFGLRRMSSPCDDKSSVKSMYSQEFAFCDKVKERLRNPADYQEFLKCLHIYSREIITRQELQTLVGDDLLGKYPDLMEGFNEFLARYGFLAGVMNKKSIWSEGHAPKSAKAEDRDRDRDRDRGQDDGVKERDREYRERDKPATIVNRDVSGSKMSIFPTKDKYLAKPINELDLSNSSQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRLELVCKQFCIRPIFELDMLLESVNVTTKRVEELLEKINNNIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLRKNAPLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEYEYTDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFIEPMLGVPSRPQGAEDTEDVVKAKNSSVKSGTASVAESDVSPGGGATIMNPKQLNTSRNGDESIPLEQPISCKAWHINGESAVKEDNCLDADRTTRKTDTSSSSTQHGKMHNSASMPDGGSGVTKQDHSNERLVNANASLASGIEHCNGRASIDNASGLTGTQSRPVVEGGLNLPSSEGGDSTRPGTSTNGALTEGTKVQKYQEESVGHFKSEREEGELSPNGDFEEDNFAVYRDAGLEATSKGKDGSMIQQYQNRHGEEVCGEARGENDADADDEGEESPHRSLEDSENAYENGDVSGSESADGEECSREEHEDGENDNKAESEGEAEGMADVNDVEGDGTLLPFSERFLLTVKPLAKYVPPVLHEKERNSQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWRASNDTSSTDQYGRFMNALYSLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLYTYEKSRKPGRFVDVVYHENARVLLHDENIYRIECSSTPTRLSIQLMDYGHDKPELTAVSMDPNFSAYLHNDFLSVVPDKKEKSGIFLKRNKRRYVCGDEYSSQALEGLQVNNGLECKIACNSSKVSYVLDTEDFLFRMRKKRKTLCQNSSCHEQAKSSNICSSRAQRFRRLFPVT 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2342 1405 MobiDBLite consensus disorder prediction 842 871 - -
Bisa11g2342 1405 MobiDBLite consensus disorder prediction 1 20 - -
Bisa11g2342 1405 Gene3D Paired amphipathic helix 322 393 IPR036600 GO:0006355
Bisa11g2342 1405 MobiDBLite consensus disorder prediction 769 809 - -
Bisa11g2342 1405 MobiDBLite consensus disorder prediction 220 312 - -
Bisa11g2342 1405 SUPERFAMILY PAH2 domain 324 391 IPR036600 GO:0006355
Bisa11g2342 1405 SUPERFAMILY PAH2 domain 21 90 IPR036600 GO:0006355
Bisa11g2342 1405 MobiDBLite consensus disorder prediction 1047 1072 - -
Bisa11g2342 1405 MobiDBLite consensus disorder prediction 1020 1034 - -
Bisa11g2342 1405 FunFam Paired amphipathic helix SIN3-like protein 106 177 - -
Bisa11g2342 1405 MobiDBLite consensus disorder prediction 792 808 - -
Bisa11g2342 1405 SMART hdac_interact2seq4b 469 576 IPR013194 -
Bisa11g2342 1405 MobiDBLite consensus disorder prediction 899 945 - -
Bisa11g2342 1405 MobiDBLite consensus disorder prediction 410 451 - -
Bisa11g2342 1405 Pfam Paired amphipathic helix repeat 348 391 IPR003822 GO:0006355
Bisa11g2342 1405 Pfam Paired amphipathic helix repeat 44 88 IPR003822 GO:0006355
Bisa11g2342 1405 Pfam Paired amphipathic helix repeat 130 174 IPR003822 GO:0006355
Bisa11g2342 1405 SUPERFAMILY PAH2 domain 103 176 IPR036600 GO:0006355
Bisa11g2342 1405 ProSiteProfiles PAH domain profile. 324 394 IPR003822 GO:0006355
Bisa11g2342 1405 Gene3D Paired amphipathic helix 27 89 IPR036600 GO:0006355
Bisa11g2342 1405 Coils Coil 549 569 - -
Bisa11g2342 1405 MobiDBLite consensus disorder prediction 946 963 - -
Bisa11g2342 1405 Gene3D Paired amphipathic helix 105 178 IPR036600 GO:0006355
Bisa11g2342 1405 Pfam C-terminal domain of Sin3a protein 1119 1365 IPR031693 -
Bisa11g2342 1405 MobiDBLite consensus disorder prediction 832 871 - -
Bisa11g2342 1405 ProSiteProfiles PAH domain profile. 107 177 IPR003822 GO:0006355
Bisa11g2342 1405 Pfam Sin3 family co-repressor 481 569 IPR013194 -
Bisa11g2342 1405 MobiDBLite consensus disorder prediction 1000 1083 - -
Bisa11g2342 1405 MobiDBLite consensus disorder prediction 899 972 - -
Bisa11g2342 1405 FunFam Paired amphipathic helix protein Sin3 27 89 - -
Bisa11g2342 1405 ProSiteProfiles PAH domain profile. 21 91 IPR003822 GO:0006355
Bisa11g2342 1405 MobiDBLite consensus disorder prediction 220 308 - -
Bisa11g2342 1405 FunFam Paired amphipathic helix protein SIN3 322 394 - -
Bisa11g2342 1405 PANTHER SIN3B-RELATED 21 1263 IPR039774 GO:0003714
Bisa11g2342 1405 MobiDBLite consensus disorder prediction 413 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2342 Bisa-ChrBisa11 47662888 47673066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2342 17 126 WRKY Transcription Factor Family AT4G12020 50.909 1.22e-23 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bisa11g2342 Sin3a_C 2.2e-59 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g2342 11 47662888 47673066 Bisa01g1662 01 28537980 28547838 CCT
Bisa11g2342 11 47662888 47673066 Bisa11g2342 11 47662888 47673066 ECH