Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2308 ATGGTGTCGCATTGAATCAACAATTGGGCAGCATTCTTTTCACAGACATTGGCTGTAAATGATGCAACAGTAAAATTTGAAATTTGGGACACAGCTGGACAGGAGGGATATCACGGCTTGGCTCCCATATACTACAGAGGCGCTGCTGCTGCTATCATTGTCTACAATATTATCAGCACAGTAGATATCTTTCCCCCAATATTTCTAAATTTAGACGCAGCTAAGAGATACAAGGCTGAGAGATTGAATTCTTCCGTCGAAGGTCAGTGCTATTACTTGTTAAATTCAAAGCTTGGGGTTGTAATCTCAGACGATTTAGTGGTTTACATTGAAAAAGCTCCCAATGCTGGTTCTTTCTTCAATTCTGTTGGCTTTTTCTTCTCTGGAGAAGCTCCCAACGCTGCAAGTGATGCATCAATTGAGCAGATTCTGCCTATTTTCCTTTCACTTTTGAAAGATGAGTTTCCTGACGTCAGCAAGCTTGACCAAGTGAACCAGGTCATAAAGAACTCTAGTTGTTGCAACCTTGTTGTGGATATATGGAGTCTTGGATGCACAGTTTTGGAAATGGCTACAACAAAGCCTCTTGGAGTGAATACGAAGGGAGCGACAGGAACTTACCTTTTGGTCTTGTTATTATCCCTCCTGATTGCCGATGCGTCTGCATCGGTGTCTCTCCGACTAGGTTCACCGAAAGCACTGTTCCAAATACCGTCATGGGACAAAACATCCACATCCATTGCAACTTATTCTAGCAAGACTAAAGGGAAATGGGACGAAGTGAGCTCAAAATTGCGCTCCCACTATGATCGTTTTCACGTCGGAGAAATCGTCGACGGCATATCCATGGTTCAAGACTGCCTCGATTATTTCGGTTACCTCAAATCCGCTTTGAACTCCGACACCACTTTGAACTCCAACACATTCACACTGGAGCTCCAATCAGCCGTCAAAAACTTCCAGAGGAATTTCAATAATGTGTCCGACACTGGCCAGCTCGACAACGACACCGTTTCGCTGATCCTTAGTCCGCGATGTGGCCTTGCAGATTATACCGATGGCTTCGCCTTAATAAATTCCATGAACCAGACTGAAGCGACTTATTATAAGTGGGGGTGGCCCCATGACAAAAGAGAGCTCACCTATGCTTTTTCGCCTAACAACGATACGACGTCGTATAAGAAGGTCTTCTCGGCAGCCTTCGGCCTCTGGGAGAACAAGACCGGGTTGAAATTCACAGAGACAACGTCGTTTGACGAATCCGACATTCAAATCTTGTTCGTTTCATTCGACGAGAAGCTCGGAGTGGTGGCCGCTGGCGGGCCGGATAATGAGACGAAGAGATGGGTAGTCGCTTTCGACGACAAAGAGAACTGGGCGTTGCAGAGTCACGTCACGGCGGAGAGCGACAGCCTGGACCTGAAGTGGTCGGTGGCGCATCAGATCGGTCACGCGCTGGGGCTGACACACTCGTCGATAGAGGAGGCCATAATGTACCCTCTCGTAGTGCCAGGGAAGGAAAGGAACTTGGCTTTCGCGGAGGATGATTTGCAGAGGATTCAGAGTTCTCCGGATATTGGTAGACACGTCACCGACGGAGTCGCTGCCGTGGGACCGAGATGGCGCCTGGTTTCTCCTATGTGGCTTGGAATTATGTTGCTTTTCTGCTTCTGA 1674 0.4749 MVSHXINNWAAFFSQTLAVNDATVKFEIWDTAGQEGYHGLAPIYYRGAAAAIIVYNIISTVDIFPPIFLNLDAAKRYKAERLNSSVEGQCYYLLNSKLGVVISDDLVVYIEKAPNAGSFFNSVGFFFSGEAPNAASDASIEQILPIFLSLLKDEFPDVSKLDQVNQVIKNSSCCNLVVDIWSLGCTVLEMATTKPLGVNTKGATGTYLLVLLLSLLIADASASVSLRLGSPKALFQIPSWDKTSTSIATYSSKTKGKWDEVSSKLRSHYDRFHVGEIVDGISMVQDCLDYFGYLKSALNSDTTLNSNTFTLELQSAVKNFQRNFNNVSDTGQLDNDTVSLILSPRCGLADYTDGFALINSMNQTEATYYKWGWPHDKRELTYAFSPNNDTTSYKKVFSAAFGLWENKTGLKFTETTSFDESDIQILFVSFDEKLGVVAAGGPDNETKRWVVAFDDKENWALQSHVTAESDSLDLKWSVAHQIGHALGLTHSSIEEAIMYPLVVPGKERNLAFAEDDLQRIQSSPDIGRHVTDGVAAVGPRWRLVSPMWLGIMLLFCF 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2308 557 SMART col_5 373 522 IPR006026 GO:0006508|GO:0008237|GO:0008270
Bisa11g2308 557 Gene3D Collagenase (Catalytic Domain) 275 523 IPR024079 GO:0008237
Bisa11g2308 557 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 371 522 - -
Bisa11g2308 557 Gene3D - 2 68 IPR027417 -
Bisa11g2308 557 ProSiteProfiles small GTPase Rab1 family profile. 1 174 - -
Bisa11g2308 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 60 IPR027417 -
Bisa11g2308 557 PANTHER MATRIX METALLOPROTEINASE 273 522 - -
Bisa11g2308 557 SMART rab_sub_5 1 113 - -
Bisa11g2308 557 Pfam Matrixin 376 522 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Bisa11g2308 557 SUPERFAMILY PGBD-like 278 351 IPR036365 -
Bisa11g2308 557 SUPERFAMILY Protein kinase-like (PK-like) 168 200 IPR011009 -
Bisa11g2308 557 Pfam Ras family 11 60 IPR001806 GO:0003924|GO:0005525
Bisa11g2308 557 Pfam Putative peptidoglycan binding domain 281 339 IPR002477 -
Bisa11g2308 557 PRINTS Matrixin signature 477 502 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bisa11g2308 557 PRINTS Matrixin signature 397 412 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bisa11g2308 557 PRINTS Matrixin signature 512 525 IPR021190 GO:0004222|GO:0006508|GO:0008270
Bisa11g2308 557 PRINTS Matrixin signature 341 354 IPR021190 GO:0004222|GO:0006508|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2308 Bisa-ChrBisa11 47189189 47197498 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2308 166 195 MAP Kinase Kinase Kinase AT1G63700 83.333 1.09e-08 56.2