Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2287 ATGACCTCAAACCTCGAACTAGCACACCAACCAATCCTACGTAGACACGTGTCACCCTCAACGCTTTCTATAAGTATCCGAAGCCCCACGTCCACATCTGAAACAACAAACAAGCAGGTAGATCCAAACACAAAATCCATTTCAACCTTTTCCTCTGTCTTTTTCTTCTTCAAGTTTCAAACTTTTCTCTTCTTTCTTCTTTCCATGACCCGAAAATCAAATGGGTCCGATCGCCGGATGCTAACCTTCCCGGCGGTTCATCCCTCTGAGGATGTTTCAGTTCCTACTCTTCTCGCTTCTCTGGTCACTATCTCTCGAAATATCTGCAATTTCAAATTTAAATTCTTCTCCAGCAACAAGAAAAATGCTAGAACAGTCATTCGTATGGTCGAGGTTCTTCTGATTTTTCTGGAAGATATCCGAGACCAGCAATGGATCCTTCCGGACTCAGTAATCCTGAGCTTGTCGGAGCTCCATTTGACCTTTCAGAAGCTTCAGTTCCTCCTGAAAGACTGCACTCGAGAAGGCTCTCGGCTATGGACGCTGATAGAGTCGGATCGAGTCGCCACACATCTCCTGCTCTTCTCCAGGTCCATAGCCACAGCTCTGGATGTCTTCCCTTTCAATTCCATTGATGTTTCAGAGGAAGTTATAGAGCAGGTGAAGTTCATTCTGAAGCAAGCTCGAAAGGGAAAAATCGAGGTTGAGCCCGATGACAGACGAGCAACGATAAGTGTTCTATCGATATTGAATCAATTTGAGAACTTGGTTACTCCTAATGAGAGTGACCTCAAATGGGTTCTTGATCATATCGGGGTTCGGAGATGGAGTGAGTGTAACAGAGAAATCAAGTTTCTGGATGAAGAAATTGTGCATGAGCGAATTAACGAAGAGAAAGGGAAGGTGGCGTTCTTGAGTAGTTTAATGGGTTTCATGTGCTACTGCAGATGCGTGGTGATCGAGGCTGTCGATGACGGAGAAGAAGAACCAAAATCTGATAATCGCAGTGAGATTCTGAGTAGTTTTCTCAACCCAGATGATTTTCGATGTCCAATCTCTCTGGACTTGATGACTGATCCAGTGACGATAGAAACGGGTCATACATATGATCGCTCTTCGATTCTCAAATGGTTCAGTAATGGAAACCCTATCTGCCCCAAGACAGGGAAAAGCCTTAGCCGCATCGAACTGGTCCCCAATTTGGTGCTTCGCAGGCTGATTCATCGATATTGTTTTGAAAACGGCATTCCCATGACTGATCTGGGACGGAAGAATCGTGATCGTGACATCACAACAAGGACTTCTCAGCCTGGAAGTTTGGCAGCAGAAGAAGCCGTGAAAATGCTAGCAAGTTTTCTCTGTGAAAAGCTTCAGAGCGAAGCAGAGGAAATGAGGAACAGAAGTGCTTACGAGATAAGGGTTCTGTCCAAAGCAAACATCTTCAATAGGTCTTGTTTTGTGGAATCTGGAACAATACCTCATTTGTTAAGGTTGTTGTCATCGAGGGATCCAACAACACAAGAAAACGCCATAGCAGCTCTTCTGAACCTCGCGAAACACCCCAAGGCCAAAACTGTGATAATTCAGAATCGTGGTTTAGGATTGATTGCAGATGTTCTGAAGAAAGGGATGAAGTTGGAATCTCGCCATCATGCTGCTGCTACATTGTATTACCTTGCTTCAGATGAAGAGAATCGAAAATTAATAGGGGAGGAGCCTGGAACAATCACATCTTTGATAAAATTGATCAAAGATGGCCCAGACAGAGGGAAAAAGAATGGCTTGGTTGCTTTATATGGCCTCCTTTTTCACCCTGAAAATCATAAGAGGATTCTTGAAGCTAAGGCAATTCCTTTGCTGGTTAACATCTTAAAAACCAGTGAAAGAGAAGATCTTGTCACAGATTCACTAGCAGTTTTGGCTACTCTAGCTGATAAAAGTGATGGAGCTATAGCAATACTTCAGAATGGAGCTTTGCATCTAATGGTCAAAATTTTGAGTTCTTCTTCAACTTCTAGAGTGGGGAAGGAGCACTGTGTGGCTTTATTGCTTTCTCTGTCTATCAATGGAGGAGCAGATGTTGTTGCTCTTTTAGTGAAGAGCTCTTCTCTCATGGGATCCTTATATTCCCTACTCAGTGAAGGGACATCTCGAGCGAGCAAGAAGGCCGGTGCTCTCATCAGGGTCCTCCATGATTTTTGTGAAAGGAGGCCCTCTGGATTCAAGAGTTCTTCAGTTCTTCCTCAAGAACAATTCATTCATGTTTGGTAA 2271 0.4381 MTSNLELAHQPILRRHVSPSTLSISIRSPTSTSETTNKQVDPNTKSISTFSSVFFFFKFQTFLFFLLSMTRKSNGSDRRMLTFPAVHPSEDVSVPTLLASLVTISRNICNFKFKFFSSNKKNARTVIRMVEVLLIFLEDIRDQQWILPDSVILSLSELHLTFQKLQFLLKDCTREGSRLWTLIESDRVATHLLLFSRSIATALDVFPFNSIDVSEEVIEQVKFILKQARKGKIEVEPDDRRATISVLSILNQFENLVTPNESDLKWVLDHIGVRRWSECNREIKFLDEEIVHERINEEKGKVAFLSSLMGFMCYCRCVVIEAVDDGEEEPKSDNRSEILSSFLNPDDFRCPISLDLMTDPVTIETGHTYDRSSILKWFSNGNPICPKTGKSLSRIELVPNLVLRRLIHRYCFENGIPMTDLGRKNRDRDITTRTSQPGSLAAEEAVKMLASFLCEKLQSEAEEMRNRSAYEIRVLSKANIFNRSCFVESGTIPHLLRLLSSRDPTTQENAIAALLNLAKHPKAKTVIIQNRGLGLIADVLKKGMKLESRHHAAATLYYLASDEENRKLIGEEPGTITSLIKLIKDGPDRGKKNGLVALYGLLFHPENHKRILEAKAIPLLVNILKTSEREDLVTDSLAVLATLADKSDGAIAILQNGALHLMVKILSSSSTSRVGKEHCVALLLSLSINGGADVVALLVKSSSLMGSLYSLLSEGTSRASKKAGALIRVLHDFCERRPSGFKSSSVLPQEQFIHVW 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2287 756 Pfam Armadillo/beta-catenin-like repeat 482 518 IPR000225 GO:0005515
Bisa11g2287 756 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 417 IPR013083 -
Bisa11g2287 756 PANTHER U BOX DOMAIN-CONTAINING 118 730 - -
Bisa11g2287 756 SMART Ubox_2 347 410 IPR003613 GO:0004842|GO:0016567
Bisa11g2287 756 SUPERFAMILY RING/U-box 345 419 - -
Bisa11g2287 756 Pfam U-box domain 345 414 IPR003613 GO:0004842|GO:0016567
Bisa11g2287 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 490 532 IPR000225 GO:0005515
Bisa11g2287 756 SUPERFAMILY ARM repeat 450 730 IPR016024 -
Bisa11g2287 756 ProSiteProfiles U-box domain profile. 343 417 IPR003613 GO:0004842|GO:0016567
Bisa11g2287 756 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 615 658 IPR000225 GO:0005515
Bisa11g2287 756 SMART arm_5 646 688 IPR000225 GO:0005515
Bisa11g2287 756 SMART arm_5 520 561 IPR000225 GO:0005515
Bisa11g2287 756 SMART arm_5 604 645 IPR000225 GO:0005515
Bisa11g2287 756 SMART arm_5 478 519 IPR000225 GO:0005515
Bisa11g2287 756 FunFam RING-type E3 ubiquitin transferase 427 741 - -
Bisa11g2287 756 CDD RING-Ubox_PUB 345 397 IPR045210 -
Bisa11g2287 756 Gene3D - 435 736 IPR011989 -
Bisa11g2287 756 FunFam RING-type E3 ubiquitin transferase 344 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2287 Bisa-ChrBisa11 46907687 46909957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2287 69 756 U-box Gene Family AT1G10560 45.262 0.0 592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g2287 11 46907687 46909957 Bisa11g2287 11 46907687 46909957 ECH