LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa11g2286	ATGAAGTTTCAAAGGCAAAAATGCTTGATATTACTTCTCCTCTTGTGCACCACCCTTGATCAACTGTGTTCTCAAACTTCTGCTTCAGATTGCGTCCTTGATATTCAGTTTTCTACATCCTTCACTAATAGATCAGATTGTGAATTGCACAGATGGGGAGGGTTTATAAATAGTTGTTGTGGATTAGATTTTGATGGCTACCTGTATGCATTAGGCCTGCATGCCAATCAATCTGGCAAAATATTCTTGAGTTCCTCAGAGCAAGAAAGTTGCTTGGCATCAATGGAATTGCTTGACAAGAACATTACAGGCTGTGGGGTAGAGAAGCTAACCAGTGGAGCTGGTGGTTGCTCTGACTACACTGTCATGGATGTCATGGAAAATCTTGGAGATAAATTGAGAAAATTAGACAAAGATTGTATGCCTTTGAGTATTGATGGTAGAACAAATGATTGTACTGCTTGTTTAAGAAGGTGGGAGGAGATTAGTGCAACATCAGACAGGAAAATGGAGTCAGAATCAGCAAATATTGAAGCCAATCTTTGTAGGTTTGCAGTATTAATCTCACTTACAAGCACCAGAGTTTATGATAGGGAATCAATTCAGGCAGTTTGTGAATGCCTTGGAACATACAGCCTTTCAGTAGGTCTCTGGATATTACCTTTTGGCCTAACTGGAGCCTCAGTAATTGGGCTTCTTGCAGCATGGACCTTGTATAGAAAAGGAATTGGAATTTCTCCAACAAAACAAGAAGAGACAGAGGATTCAACCTCTCCTAAGATAACTATGAAGGAAGTTTATACGGCAACCAACAATCTCAGTGCATCAAATTTCATTGGCCAGGGCATAGCTGGAAAAGTGTACAAAGGTATACTATCCAATGGTCAGCATGTTGCCTTCAAGCATATAACCAATGAAGGGTACTTGGAGACATTTGTTAGAGAAGTGAGAAGCCTTTCCCATGTTAGGCATCCAAACCTAGTATCTTTGGTCGGATACTGTGAAAGTGAAGGCAAAGGTAAACTTCTTTCATGGATTCAAAGACTGAAGATTGCAGTTGATGGTGCAAGAGGTCTATTGTTTCTCCACACCTACCCAGGTGGCCGCATAATTCACCGTGATATTAAGCCATCAAACATCCTCATTGATACCAACTTGCGGGCAAAACTTTCAGACTTCGGGTTGTCCAAGGTTATGGACCTAGGCCAATCGTATGTGAGCTCCGAAGTGAGAGGAACATTAGGTTATATTGATCCTGAATACCGGAAAAACCACCATGTGAAGGCCTCAGGTGATGTCTACAGTTTTGGGATGGTGTTACTGCAACTTTTATCAGGACACAGGGTCATCAACTTCAATTTCCAGACACCAATGTCCCTAAATAAAATGGCCAGAATTTTTGCTAGAGGTGGAGATATATCAGAATTTGCTGATCCTAATCTCAAAGGAGAGTACTCTGGAGAAGCGTTTAGCATCACACTAAATCTCGCTCTGTCATGCATAGGGCTCAGGCAGCAAAGGCCATCTATGGAGCAAGTTTTACGCAGCCTAGAAAAGGCACTGGAAATCTCATCACAAGCTAAAGCATTCACATCTTTCACAACGTAA	1608	0.4148	MKFQRQKCLILLLLLCTTLDQLCSQTSASDCVLDIQFSTSFTNRSDCELHRWGGFINSCCGLDFDGYLYALGLHANQSGKIFLSSSEQESCLASMELLDKNITGCGVEKLTSGAGGCSDYTVMDVMENLGDKLRKLDKDCMPLSIDGRTNDCTACLRRWEEISATSDRKMESESANIEANLCRFAVLISLTSTRVYDRESIQAVCECLGTYSLSVGLWILPFGLTGASVIGLLAAWTLYRKGIGISPTKQEETEDSTSPKITMKEVYTATNNLSASNFIGQGIAGKVYKGILSNGQHVAFKHITNEGYLETFVREVRSLSHVRHPNLVSLVGYCESEGKGKLLSWIQRLKIAVDGARGLLFLHTYPGGRIIHRDIKPSNILIDTNLRAKLSDFGLSKVMDLGQSYVSSEVRGTLGYIDPEYRKNHHVKASGDVYSFGMVLLQLLSGHRVINFNFQTPMSLNKMARIFARGGDISEFADPNLKGEYSGEAFSITLNLALSCIGLRQQRPSMEQVLRSLEKALEISSQAKAFTSFTT	535

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa11g2286	535	Gene3D	Phosphorylase Kinase; domain 1	240	340	-	-
	Bisa11g2286	535	Pfam	Protein tyrosine and serine/threonine kinase	276	339	IPR001245	GO:0004672\|GO:0006468
	Bisa11g2286	535	Pfam	SPARK	26	171	IPR043891	-
	Bisa11g2286	535	SUPERFAMILY	Protein kinase-like (PK-like)	254	517	IPR011009	-
	Bisa11g2286	535	FunFam	probable receptor-like protein kinase At5g59700	335	533	-	-
	Bisa11g2286	535	PANTHER	LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1	110	519	-	-
	Bisa11g2286	535	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	370	382	IPR008271	GO:0004672\|GO:0006468
	Bisa11g2286	535	Gene3D	Transferase(Phosphotransferase) domain 1	341	534	-	-
	Bisa11g2286	535	Pfam	Protein kinase domain	351	514	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa11g2286	535	SMART	serkin_6	273	524	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa11g2286	535	ProSiteProfiles	Protein kinase domain profile.	273	521	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa11g2286	Bisa-ChrBisa11	46904651	46907344	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa11g2286	246	525	Receptor kinase-like Gene Family	AT1G49100	36.250	2.70e-49	181

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_URK-2	Bisa11g2286		Pkinase	1.5e-22	CL0016