Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2271 ATGGGTTGCTTTCAGTGGAGCTTCTTGAACATTTTGGATAGTGCTATAGTGAAACTTGGGGTGGTAAGAGAGTCAAAACTGCTTTCTGCGCCTCATTCTGTGCAGGAGGAGACAGCATCAATGGAGTGCTTCAGACCCATGGTTCAGACCAAGGCTTGGGATTATGTTATCGTTTGGAAATATGGGGACGACCCAACAAGGTTCATCGAGTGGATGGGTTGCTGTTGTAGTGGTGGGTGTAGTAAGGGAAGCAGTGAGCAGGTCAATACAGAAGAGGAAAAGGTTGAAGAATACAGATTGAGTCCTATTTGCAGGGATAGTCAGTTTCAGCATCCAGTGAGGACGAAGGCTTGTGAGGCTCTTGCTCAGCTTCCTAATGCAATGCCACTGTATTCTGGTGTCCATGGAGATGTGGCGATATCAAAACAACCCAGATGGCTTACCCAGGATTCCAGGGGAACACAAGTTTTGATCCCTATTCTTGGTGGTCTTATAGAGCTCTTCACAGCAAAGCTTATACCAAAAGATACAAGGATGATAGAGGTCATAACCGCACGCTGCTGTGTCTCTATGAAGAAAGAAGCCATGTCTGCACAGAGATACACCAGTCTGTGCCTCAGTGAACATACACCATCGGAAGAATACTATCCAGAAAGCGTAATTTCCAGTGTACACGTATCCCATCCAAACATTGAAGGATCCTCCAGTGGGTCAAATCCTTCAAATGAAACTTTAGAAAAGCAGCAGACAGGTTTGGGTTTCAACTGTGGCACTCAAGAAGAAGAGAAATCAGAAATTTTAAGGGAGCCTCATAGGGAAGGCTTCATATCTAAAAATCTTGTCACAGAAAGGAATAGGAGGAAGAGGATCAAAGATGCTCTCTTTACGCTACGGTCTTTAGTCCCAAAGATAACCAAGATGGATAAGGCATCCATTCTTGGAGATGCCATTGATTACATACAGGAAATGCAGGAGCAAGTCAAAGGACTTGAAGATGAGATACGGGATTTGGAAGAAGAGAAAACACCACAGTTGAGGAGGCCAATGGAGAAGGAAGAAGGAGGAACCAGAAGCTTCCCTCTTACTGATCTCATCCAAAGGTCCTCTGTTTGCAATAAAAAAACCCAGATAGAGGTGGAAGTGGAGGTGAACCAGATTGGCAGGAGAGACTTTTTTATTAAATTATGCTGTGAGCAGAAGCGAGGTGGGTTTGCAAGATTAATGGAGGCTTTACATTCCTTTGGACTAGAGGTGGCCGATGCCAGTGTGAACACTATAGATGGCAAAGTCCTCAACATTCTTACTGTTGAGGCAAACAAGCAGGATATTCACCCAAAGATATTAAGGGAGTATTTAACTGAGCAAGCTGGTTCATGGTAG 1380 0.4435 MGCFQWSFLNILDSAIVKLGVVRESKLLSAPHSVQEETASMECFRPMVQTKAWDYVIVWKYGDDPTRFIEWMGCCCSGGCSKGSSEQVNTEEEKVEEYRLSPICRDSQFQHPVRTKACEALAQLPNAMPLYSGVHGDVAISKQPRWLTQDSRGTQVLIPILGGLIELFTAKLIPKDTRMIEVITARCCVSMKKEAMSAQRYTSLCLSEHTPSEEYYPESVISSVHVSHPNIEGSSSGSNPSNETLEKQQTGLGFNCGTQEEEKSEILREPHREGFISKNLVTERNRRKRIKDALFTLRSLVPKITKMDKASILGDAIDYIQEMQEQVKGLEDEIRDLEEEKTPQLRRPMEKEEGGTRSFPLTDLIQRSSVCNKKTQIEVEVEVNQIGRRDFFIKLCCEQKRGGFARLMEALHSFGLEVADASVNTIDGKVLNILTVEANKQDIHPKILREYLTEQAGSW 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2271 459 Coils Coil 313 347 - -
Bisa11g2271 459 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 278 347 IPR036638 GO:0046983
Bisa11g2271 459 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 175 449 - -
Bisa11g2271 459 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 274 323 IPR011598 GO:0046983
Bisa11g2271 459 MobiDBLite consensus disorder prediction 227 270 - -
Bisa11g2271 459 SMART finulus 280 329 IPR011598 GO:0046983
Bisa11g2271 459 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 45 184 IPR025610 -
Bisa11g2271 459 MobiDBLite consensus disorder prediction 227 257 - -
Bisa11g2271 459 Pfam Helix-loop-helix DNA-binding domain 282 324 IPR011598 GO:0046983
Bisa11g2271 459 Gene3D - 271 341 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2271 Bisa-ChrBisa11 46739934 46743061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2271 128 452 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10610 34.366 6.05e-48 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa11g2271 bHLH-MYC_N 2.4e-15 CL0161