Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2244 ATGGAGGAAATGTACGGTGTTCCGTCATCCACGGCGGAGTACTCAGACAAGGCCTTGATGACGCCGGAAAATCTGATCTTCCCGGCCGACTACCAGAGCTTCCTCATGTCTTCTTCCGCCGCGCCCTTCCGTGATCGGATGCCGATTTTCGGATCCGACGAGATGCTCTCCGCTGCCTCCGCGGTTACCGAAGCTGAAGCCACCGTCGCTGCTCCCGAATTTCGGCCACAAGAGGACTCCCCTTCCCTCATCAAAGCCAGAATCGCATCTCATCCTCACTATCCTCGTCTCCTTCAAGCTTACATCGACTGCCAGAAGGTAGGAGCGCCTCCGGAGATGGCGTTTTTGTTGGACGACATCCGGCTAGAAAACGACCTTTGTAAGAGGGACGTTGTTTCCACGTGCTTTGGAGCCGATCCCGAGCTTGACGAGTTCATGGAAACCTACTGCGACATGTTGTTGAAGTATAAATCTGATCTTTCGCGGCCATTTGATGAAGCAACCTCCTTCCTCAACAAGATCGAAACGCAGCTCGCCAATCTTTGCACTGGTGCTTCCGTTCTAAGCCTTTCTGATGATGGGGGTGTGTCTTCGGAAGAAGATTTTAGTACCGGAGAGATTCAAGATGGTCAAGCAAGGGGTGAAGACCGAGAGCTTAAGGATAGGCTTTTGCGCAAGTTTGGGAGTCACATTGGTACTTTAAAATTGGAGTTCTCAAAGAAGAAGAAGAAGGGTAAGCTACCGAAAGAAGCGAGGCAAGCCCTGCTTGAGTGGTGGAATGTTCACTACAAGTGGCCTTACCCAACGGAAGCTGATAAAATTGCACTGGCTAAGTCAACGGGTCTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGAAAGCGCCACTGGAAACCGTCTGAGAACATCAACTTGCAGTTTTCTGCCATGGATAACCTCTCTGGACGGTTCTTTTCTGACGAATGA 972 0.501 MEEMYGVPSSTAEYSDKALMTPENLIFPADYQSFLMSSSAAPFRDRMPIFGSDEMLSAASAVTEAEATVAAPEFRPQEDSPSLIKARIASHPHYPRLLQAYIDCQKVGAPPEMAFLLDDIRLENDLCKRDVVSTCFGADPELDEFMETYCDMLLKYKSDLSRPFDEATSFLNKIETQLANLCTGASVLSLSDDGGVSSEEDFSTGEIQDGQARGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQALLEWWNVHYKWPYPTEADKIALAKSTGLDQKQINNWFINQRKRHWKPSENINLQFSAMDNLSGRFFSDE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2244 323 SMART HOX_1 240 305 IPR001356 GO:0003677
Bisa11g2244 323 Pfam KNOX2 domain 136 182 IPR005541 GO:0003677|GO:0005634
Bisa11g2244 323 SMART KNOX2_2 132 183 IPR005541 GO:0003677|GO:0005634
Bisa11g2244 323 ProSiteProfiles ELK domain profile. 218 238 IPR005539 GO:0003677
Bisa11g2244 323 Pfam KNOX1 domain 84 124 IPR005540 GO:0003677|GO:0005634
Bisa11g2244 323 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 308 - -
Bisa11g2244 323 Pfam Homeobox KN domain 258 297 IPR008422 GO:0003677|GO:0006355
Bisa11g2244 323 ProSitePatterns 'Homeobox' domain signature. 276 299 IPR017970 GO:0000981|GO:0006355
Bisa11g2244 323 ProSiteProfiles 'Homeobox' domain profile. 238 301 IPR001356 GO:0003677
Bisa11g2244 323 MobiDBLite consensus disorder prediction 196 215 - -
Bisa11g2244 323 SUPERFAMILY Homeodomain-like 239 308 IPR009057 -
Bisa11g2244 323 Pfam ELK domain 218 239 IPR005539 GO:0003677
Bisa11g2244 323 FunFam Homeobox protein knotted-1-like 2 243 305 - -
Bisa11g2244 323 SMART ELK_2 218 239 IPR005539 GO:0003677
Bisa11g2244 323 SMART KNOX1_2 82 126 IPR005540 GO:0003677|GO:0005634
Bisa11g2244 323 Gene3D - 237 309 - -
Bisa11g2244 323 CDD homeodomain 250 302 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2244 Bisa-ChrBisa11 46312124 46319452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2244 1 323 Homeobox Transcription Factor Family AT1G23380 65.373 4.00e-145 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bisa11g2244 KNOX2 7.4e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g2244 11 46312124 46319452 Bisa01g1564 01 26685541 26692092 CCT
Bisa11g2244 11 46312124 46319452 Bisa11g2244 11 46312124 46319452 ECH