Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2230 ATGACCACAACTATGGCCTCCCTTAACCCCCTTCCTTCTCTGCTTCTCCCTCTTCTAGCAAGCTTGTTCCTCAGAACCAGAGCATTCAATATAGAGCCTATGAATTGCTCTGCTACGTCCCCACCATGCAATGCCTCGCTTTACCACATAACTCACAATCTCAAGCAAGAAGACATTGCACGTTTCTACTCTGTCAATATGTCCCAGATGAGTCCCATAAAGCGAAACAACAAGAAGGATTACCTCATAACTGTACCCTGTACTTGCAGAAACATCAGCGACCTTAGAGGGTATTTCTACGAGACAATCTATAACGAAGTGAAGCTTGGCTACACTTTCGAGGACATTTCGGAGGTGATGTACAGTGGACAAGCATGGCCTGTGAACAATCAAACTTTGGCTCCGAATGATCCTCTGACGATATATCTTCCATGTGGGTGTTCAGCGAGTGAGTCGCAAATCGTTGTGACGTATACGGTGCAGGGCGGTGACACGCCCTCGGGAATCGCTAATCTGCTAACGGCTACACTGGATAACATGAAGAGCATGAACAACATCTTAAAAGAGAACCCGTCGTTTATAGATGTGGGGTGGGTGTTATTTGTTCCCAGAGAGTTGAATGGGCTTCCATCCCCAAGTGATATTCATGGTGATATAGGTAGTTCCTTTGCTTGCATGGCAAACAAGATGTTCAATCTTCTTGATTTGATTTTTGCCTTGTCGGCAGGAGAAATGAGCAAGAAGTGGAAAATAGCCATTGGCGTAACAGCAAGCGTGGCATTGATTTCATTTTCCATAATGCTTATTCTCATTCTCAGGAGCAAAACACGAAAAGAAGATCCTAAAGCTGCTCCTAGAACACCAGTTTCCAATAGAGCTCTTTCCAACGCCCTTCATACAGATAATATGAGAGATATAACAACATTTGAATCAGAAAAACCAGTAATATTTAGTCTTGAGGAGATTGAAGAGGCTACCAATAACTTTGATGAAGCCAGAATAATTGGAGTTGGTGGATATGGAAGTGTGTATTTTGGAGTTTTAGGCGAGCAGGAGGTTGCCATAAAGCAGATGTGGTCTAATAAATCAAAAGAGTTTAATGCAGAACTGAAAGTCCTATGCAAACTTCATCATATCAACATTGTGGAGCTGTTAGGATATGCCAGTGGAGAAGATCACCTCTACTTGGTCTATGAGTTTGTTCCAAATGGATCTCTCAGTGATCATCTTCATGATCCATTACTAAAAGGTTATCAGCCTCTTCCTTGGAATGCCAGAGTACAGATTGCTCTAGATGCTGCAAAAGGTCTCGAATACATACATGATTACACGAAAGCGCGATATGTCCACCGTGATGTAAAGACAAGCAATATTCTTCTTGATGAGAAGGACAGAGCAAAGGTAGCTGATTTTGGGCTTGCAATACTGGTAGAACGAACAAATGGTCAAGGTTTTATGGCAACAAGGCTTGTTGGAACACCTGGTTACCTTCCACCAGAATCTGTGAAGGAACTTCAGTTGACCCCAAAAACTGATGTGTTTGCATTTGGAGTGGTTATATCAGAGCTGGTAACAGGGAAACATGCTTTGTTTCGTGACAGTCATGATGCCAGTAAAATGAAGTCCCTGATTACTGTTATTAATGAAGTATTCGAAGATAATGAGCCAGAGTCCGCGTTAGAAAATGTCATTGATCAGAATCTTCAAGGTGGCTATCCTCGGGAAGACGCATACAAGATGGCAGAGTTAGCAGAGAGATGCTTAAGGGAAGAACCAGTTGAGAGGCCTGAAATGAGGGATATTGTTGGGGCATTGTCACAGCTTGTGATGTCGTCCATGGAGTGGGAAGCATCACTTGCGGGAAAAAGCCACGTCTTCTCCGCCTTATTCGACGAAAGACGACGTCTTCTTGAGCTCAGCGAAGGAGATCTTGTGTCTGCCGCTAGCGGTGTCTTCTTAAGCTTGGCAAATGAGATCTTGCATATCTTCTTCATCAGTTCTCCGTCAGATCGTTGGTCTTTCTTTCTCCATTGCGGCTACCCCAATTCTCCTTTGTAG 2058 0.4354 MTTTMASLNPLPSLLLPLLASLFLRTRAFNIEPMNCSATSPPCNASLYHITHNLKQEDIARFYSVNMSQMSPIKRNNKKDYLITVPCTCRNISDLRGYFYETIYNEVKLGYTFEDISEVMYSGQAWPVNNQTLAPNDPLTIYLPCGCSASESQIVVTYTVQGGDTPSGIANLLTATLDNMKSMNNILKENPSFIDVGWVLFVPRELNGLPSPSDIHGDIGSSFACMANKMFNLLDLIFALSAGEMSKKWKIAIGVTASVALISFSIMLILILRSKTRKEDPKAAPRTPVSNRALSNALHTDNMRDITTFESEKPVIFSLEEIEEATNNFDEARIIGVGGYGSVYFGVLGEQEVAIKQMWSNKSKEFNAELKVLCKLHHINIVELLGYASGEDHLYLVYEFVPNGSLSDHLHDPLLKGYQPLPWNARVQIALDAAKGLEYIHDYTKARYVHRDVKTSNILLDEKDRAKVADFGLAILVERTNGQGFMATRLVGTPGYLPPESVKELQLTPKTDVFAFGVVISELVTGKHALFRDSHDASKMKSLITVINEVFEDNEPESALENVIDQNLQGGYPREDAYKMAELAERCLREEPVERPEMRDIVGALSQLVMSSMEWEASLAGKSHVFSALFDERRRLLELSEGDLVSAASGVFLSLANEILHIFFISSPSDRWSFFLHCGYPNSPL 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2230 685 Gene3D Phosphorylase Kinase; domain 1 299 400 - -
Bisa11g2230 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Bisa11g2230 685 ProSiteProfiles LysM domain profile. 156 202 IPR018392 -
Bisa11g2230 685 Pfam Protein kinase domain 330 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa11g2230 685 Gene3D LysM domain 148 208 IPR036779 -
Bisa11g2230 685 ProSitePatterns Protein kinases ATP-binding region signature. 335 356 IPR017441 GO:0005524
Bisa11g2230 685 ProSiteProfiles Protein kinase domain profile. 329 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa11g2230 685 FunFam PTI1-like tyrosine-protein kinase 3 401 619 - -
Bisa11g2230 685 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 35 627 IPR044812 GO:0019199|GO:0045087
Bisa11g2230 685 SMART serkin_6 329 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa11g2230 685 CDD LysM 156 202 IPR018392 -
Bisa11g2230 685 Gene3D Transferase(Phosphotransferase) domain 1 401 624 - -
Bisa11g2230 685 SMART LysM_2 157 203 IPR018392 -
Bisa11g2230 685 SUPERFAMILY LysM domain 156 203 IPR036779 -
Bisa11g2230 685 FunFam Kinase family protein 305 400 - -
Bisa11g2230 685 SUPERFAMILY Protein kinase-like (PK-like) 313 609 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2230 Bisa-ChrBisa11 46158095 46164433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2230 309 633 Receptor kinase-like Gene Family AT1G51940 50.904 2.46e-110 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Bisa11g2230 Pkinase 9.2e-49 CL0016