LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa11g2207	ATGGAAGAATTCCTCAGGCGCCTCAACGCCCTCCCCCACATTCCAGAACCCGACCCCTCCCACTCCCTCTCCGACCCCCCCAAGAAGTGCTCCTCCAAGAAGACGTCCAGAGATAACGGCCGCTCCGGCGGCGCAATGAGGTACCGCGGCGTCAGGCGGAGGCCGTGGGGCCGTTACGCTGCCGAGATACGGGACCCACAGTCGAAGGAGCGCCGATGGCTCGGCACCTTCGACACGGCTGAGGAAGCCGCCTGCGCCTACGACTGCGCCGCCCGAGCCATGCGTGGCCTCAAGGCTCGTACCAACTTCGTCTACCCCACTTCCCCTCCTTACTCTCTCTCTCACCATCTCTTCCCTCCTCCTTTCGCCTTCCCCAACAAACTATCTCAGCCCTCGAATATCAACAAAACCGTCCAGAGCTGCCACGTGGCACCCTCCCAAGGAAACTCCACTCTCAACATGCCTCTCTGCCGTGACCTCCTCAACTCTTCGCCTAACCCTTCTTCGTCGACGTGCTGTAGGTGTCTCCAAGGTTGTTGTCTGTTGAATCACAATACTGCTGGTCGTAATGGCACGTGCGGGTCTTCTATGGATACCCATCACGATGGAACAACCAAAAGCATTCATCCTGAAGCTGCTGATGACGACGACTTCGAGTTCTTCCCAAGAGAATCTTCAGGCTCGGGGTTGTTGGAGGAGATTGTTCACAAATTTTTGCCCAAATCCAAGCCCAACAAAGACGATTTCACTACTACTACTACTACTACTACTACTACGTTACCAGAGTTACCACCTCAGCCAGTGTCCCATTCCATTTTCGTTTCCAACAGTCAGTGCTATAACCACAACGACAATTCGACAGATCAGAGTTTTGATGTGTCTTTCGACCGCCAAGGTTTTCTTCCTCAGCTGCAACAACAGTTAGACATTCTTAATGGGTTTAACTCAGTGCAGGATATGCCTTTTGGGAACGATCAATGGATGATGGACGATGCAGAAATCTCAATCACCCAAGATATTGCTCGTTACCAAGAGTTTTTTAGTACTTTTGCAGCCAACATCCAAAATGTTTAA	1074	0.5233	MEEFLRRLNALPHIPEPDPSHSLSDPPKKCSSKKTSRDNGRSGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPPYSLSHHLFPPPFAFPNKLSQPSNINKTVQSCHVAPSQGNSTLNMPLCRDLLNSSPNPSSSTCCRCLQGCCLLNHNTAGRNGTCGSSMDTHHDGTTKSIHPEAADDDDFEFFPRESSGSGLLEEIVHKFLPKSKPNKDDFTTTTTTTTTTLPELPPQPVSHSIFVSNSQCYNHNDNSTDQSFDVSFDRQGFLPQLQQQLDILNGFNSVQDMPFGNDQWMMDDAEISITQDIARYQEFFSTFAANIQNV	357

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa11g2207	357	SMART	rav1_2	47	110	IPR001471	GO:0003700\|GO:0006355
	Bisa11g2207	357	MobiDBLite	consensus disorder prediction	1	49	-	-
	Bisa11g2207	357	Gene3D	AP2/ERF domain	46	105	IPR036955	GO:0003700\|GO:0006355
	Bisa11g2207	357	PRINTS	Ethylene responsive element binding protein signature	70	86	IPR001471	GO:0003700\|GO:0006355
	Bisa11g2207	357	PRINTS	Ethylene responsive element binding protein signature	48	59	IPR001471	GO:0003700\|GO:0006355
	Bisa11g2207	357	Pfam	AP2 domain	47	96	IPR001471	GO:0003700\|GO:0006355
	Bisa11g2207	357	MobiDBLite	consensus disorder prediction	246	266	-	-
	Bisa11g2207	357	CDD	AP2	47	103	IPR001471	GO:0003700\|GO:0006355
	Bisa11g2207	357	ProSiteProfiles	AP2/ERF domain profile.	47	104	IPR001471	GO:0003700\|GO:0006355
	Bisa11g2207	357	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	33	209	-	-
	Bisa11g2207	357	FunFam	Ethylene-responsive transcription factor 2	46	105	-	-
	Bisa11g2207	357	SUPERFAMILY	DNA-binding domain	47	104	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa11g2207	Bisa-ChrBisa11	45842536	45843609	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa11g2207	1	241	AP2-EREBP Transcription Factor Family	AT1G24590	41.176	1.60e-43	150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bisa11g2207		AP2	2.5e-12	CL0081