Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2199 ATGCGTGCGCTCGGGAACGTCCCTGATTTTGACTCCCAGGGTTTCAGTGTTTGTCATCCACGTTTGCCTAAGCGCGTCGACCCGGTCGAGTGGGAGGGGTTGAGAATTGAGATTATGTTCATTATATCACATAACACACCAAAAGTATATGAATGGACGAATGACCCAAGAGAGGTTTCCTTCTTCTCACTCTACACCTGCGACTCCAAATTGCTGGCCTTCCCTTCTCTCCCTCCCTCTTCTAAGCCTAATTGCGCTCTTCAATTCCTCTTCGACTTTCGATTTCTTGTGAATTTGACGGAGGAAGAAATGGAATTCGAGGATCAAGAGGAGCAAGAGGAGGAACTGGGTATGGGACCCGCGCCGAGCTACGACTCCCTGGGGAACCCGACCCGGCTGAAAATGCCGGGCGCTGGAGGCGCCGGAGAGGTGATGGTGCTTCAGCCGGCGAGGAATAGTAATAGCAAGGCCAGGTACAGGGAGTGCCTGAAGAACCACGCTGTGAGCATCGGGGGTCACGCGCTCGACGGGTGCGGTGAGTTCCTGCCAGCTGGCGCAGAAGGCACGCTCGACGCTCTCAAATGCGCCGCTTGTAACTGCCACCGCAATTTCCACCGCAAAGAAACGGACACGATCGGACTGGGGGAGCCGTATTTGTTGACCCACCATCCCCATCCCCACCACCACCATCCGCAGGCGCCGCCTCAGTTCTCGGCGTATTGCCGGGCGGCGCCGGCAGGGTACTTACACGTGGGAGGGCAGCAGAGGGGGGCGACGCTGGCCTTGCCGTCGACGTCGGGGGCAGGGGGAGGGACCCAGAGCGCGAGGGATGATCAAGAGGACGTGTCGAACCCCAGTGGAGGAGGAGGGGGAGAAGGAGGGTCGAAGAAGAGGTTCAGGTCGAAGTTCACGCAGGAGCAGAAGGACAAAATGCTGGGTTTAGCGGAGAGGCTGGGTTGGAGGATTCAGAAGCACGACGAGGCGGTGGTCCAGCAGTTCTGTAACGAGTCGGGCGTCAAGCGTCACGTTCTCAAGGTTTGGATGCATAACAACAAGCACACACTTGGTAAGAAGCCCTAA 1080 0.575 MRALGNVPDFDSQGFSVCHPRLPKRVDPVEWEGLRIEIMFIISHNTPKVYEWTNDPREVSFFSLYTCDSKLLAFPSLPPSSKPNCALQFLFDFRFLVNLTEEEMEFEDQEEQEEELGMGPAPSYDSLGNPTRLKMPGAGGAGEVMVLQPARNSNSKARYRECLKNHAVSIGGHALDGCGEFLPAGAEGTLDALKCAACNCHRNFHRKETDTIGLGEPYLLTHHPHPHHHHPQAPPQFSAYCRAAPAGYLHVGGQQRGATLALPSTSGAGGGTQSARDDQEDVSNPSGGGGGEGGSKKRFRSKFTQEQKDKMLGLAERLGWRIQKHDEAVVQQFCNESGVKRHVLKVWMHNNKHTLGKKP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2199 359 MobiDBLite consensus disorder prediction 108 132 - -
Bisa11g2199 359 MobiDBLite consensus disorder prediction 259 299 - -
Bisa11g2199 359 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 159 208 IPR006456 -
Bisa11g2199 359 NCBIfam homeobox domain, ZF-HD class 296 352 IPR006455 -
Bisa11g2199 359 SUPERFAMILY Homeodomain-like 282 357 IPR009057 -
Bisa11g2199 359 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 152 355 - -
Bisa11g2199 359 MobiDBLite consensus disorder prediction 259 281 - -
Bisa11g2199 359 FunFam Zinc-finger homeodomain protein 2 288 357 - -
Bisa11g2199 359 Coils Coil 96 116 - -
Bisa11g2199 359 Pfam ZF-HD protein dimerisation region 157 209 IPR006456 -
Bisa11g2199 359 Gene3D - 282 356 - -
Bisa11g2199 359 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 158 208 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2199 Bisa-ChrBisa11 45702478 45703785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2199 104 355 ZF-HD Transcription Factor Family AT4G24660 48.810 6.67e-72 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Bisa11g2199 ZF-HD_dimer 1.7e-29 No_clan