Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2154 ATGACTTGGTTTTCTTTCTGGGTTCCAGTAGAAGAAGATGAAGAAAGTAGGGCAAACAAGGAAAAGAGCTTTCCTCTTCCTGTGGTGTTTTGGAATAGCTGTGCAGCTTTGTTTCTTACTTGAAGAGCTCAATTGAAGAGGAACATTCCACAACGGTCACATTTTCCTGCTGCAGTCAAGTTGAAAATTGAGGATAACCAGGTTGTGATAGATAATGGACTCGTCCGCGTTACGTTGTCATCCCCAGAGGGCTATGTCCTTGGAATATCGTACAATGGTATCGACAATGTTCTCGATGCTCACAACGAACATGAGGATAGGGGTTATTTAGACGTTGTCTGGCAGGAACCAGCAAAAAACCAAGATAAATTTCAGAGAATCGACGGGACTAAATTCTCAGTGATAGAAGAGAACGAAAATCAAGTGGAAATTTCATTTTTAAGAACATGGACATCTTCCATGAAGGGATCTGTCCCTATGAGTATTGATAAAAGGTATATATTGCGAAGAGGCAATTCGGGATACTACACGTACGCAATATTTGAGCGGTCAAAAGGATTTCCAGCGACTGTGGTTACTCAAATAAGGATTGTTTACAAGCTCCAAGAAGAAATGTTCGACTATATGGCTGTATCAGAGAGGAGGCAAAGAAAGATGCCAACGGCAAAAGATAGAGAAACTGGTCAACCGCTTGATTATCCTGAAGCTGTTCTCTTAACCAAAGAAAAGGACCCAGAAATCAGAGGAGAGGTGGATGACAAATACCAGTACTCGTCTAAGAACCAAGATAACCGTGTACATGGATGGATAAGCTCTGATTCGGAATCACCCACGGGCTTTTGGGTTATAACGCCAAGTAATGAGTTCCGGAATGCTGGGCCCATCAAGCAAGACCTCACCTCCCATGTTGGGCCCACCACCCTTGCTATGTTTGTTAGCAGCCACTATGCTGGGACGGAAGTGATGATAAATTTTGAAGAAGGGGAAACTTACAAGAAGGTTTTTGGCCCTGTATTTGTCTATCTTAACTCTGTTTCCAACAAGATGCTTTCACATGGGCTCTGGTCAGATGCTGTTCGACAGTACTATAGGGAAGCCAGCAGGTGGCCCTACAATTTCCCTCGATCTCCAGATTTCATTCTACCCAAACAACGTGGAACAGTTGCTGGACGATTACTAGTGCGAGACTGGTACTTAAGGGGATGGAGAATTTTAGACGCTAAGTTTGCTTATGTTGGTCTAGCTCTGCCAGGAGAAAATGGATCGTGGCAAACAGAGAGCAAGGGTTATCAATTCTGGACTCAGGCTGACTGGAAAGGCTCCTTCACAATCAGAAACGTTGTACCAGGGGACTATAACTTGTATGCCTGGGTTCCTGGCTTTATTGGTGATTATAGATACAATGTTACAGTCACCGTCAAACCAGGTCGTATCATAGTACTGGATTCACTTGTATATATTCCTCCAAGAAATGGCCCTACCATTTGGAAAATTGGTGTCCCAGATCGCTCAGCCGCAGAGTTCTACGTTCCAGACTCTGACCCTAAGCTTGTGAACAAATTATTTCTGAAAGACCCAAAAGACAAGTTCAGGCAATATGGGTTGTGGGAACGTTACACTGATTTATATCCAAATAATGATCTTGTTTACAAGGTCGGCGTCGACCAGTATGACAAGCATTGGTTTTTTGCTCATGTTACCAGAAAAGTGGGAAATAAGGGATACCAACCAACGACGTGGCAGATTAAATTTGAACTCAAAGATGTCCCATCAGAAGGAAACTACACACTTCATGTGGCCTTGGCATCAGCCACTGATGCTCATTTGCAGATTTGGTTCAATGATGGGAAGGAGGATGGTGGCTTGACGACAGGGACAATAGGGAGAGACAACGCAATAGCAAGGCACGGAATCCATGGATTGTATAGGCTGTTCAGCTTTGAGGTAGCAAGTGATAGATTTGTGAAGGGAATGAACACACTGTATCTGAAGCAGATAAAAGCCACCGGTCCTTTCCAAGGACTCATGTATGACTATCTCCGTTTAGAGACACCTCTTCCTCCTACATCCATTTGA 2076 0.4369 MTWFSFWVPVEEDEESRANKEKSFPLPVVFWNSCAALFLTXRAQLKRNIPQRSHFPAAVKLKIEDNQVVIDNGLVRVTLSSPEGYVLGISYNGIDNVLDAHNEHEDRGYLDVVWQEPAKNQDKFQRIDGTKFSVIEENENQVEISFLRTWTSSMKGSVPMSIDKRYILRRGNSGYYTYAIFERSKGFPATVVTQIRIVYKLQEEMFDYMAVSERRQRKMPTAKDRETGQPLDYPEAVLLTKEKDPEIRGEVDDKYQYSSKNQDNRVHGWISSDSESPTGFWVITPSNEFRNAGPIKQDLTSHVGPTTLAMFVSSHYAGTEVMINFEEGETYKKVFGPVFVYLNSVSNKMLSHGLWSDAVRQYYREASRWPYNFPRSPDFILPKQRGTVAGRLLVRDWYLRGWRILDAKFAYVGLALPGENGSWQTESKGYQFWTQADWKGSFTIRNVVPGDYNLYAWVPGFIGDYRYNVTVTVKPGRIIVLDSLVYIPPRNGPTIWKIGVPDRSAAEFYVPDSDPKLVNKLFLKDPKDKFRQYGLWERYTDLYPNNDLVYKVGVDQYDKHWFFAHVTRKVGNKGYQPTTWQIKFELKDVPSEGNYTLHVALASATDAHLQIWFNDGKEDGGLTTGTIGRDNAIARHGIHGLYRLFSFEVASDRFVKGMNTLYLKQIKATGPFQGLMYDYLRLETPLPPTSI 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2154 691 CDD RGL4_C 496 683 - -
Bisa11g2154 691 Gene3D - 382 482 - -
Bisa11g2154 691 CDD RGL4_N 59 348 - -
Bisa11g2154 691 Gene3D - 58 346 IPR014718 GO:0030246
Bisa11g2154 691 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 64 685 - -
Bisa11g2154 691 CDD RGL4_M 384 484 IPR029413 -
Bisa11g2154 691 Pfam Polysaccharide lyase family 4, domain II 409 477 IPR029413 -
Bisa11g2154 691 SUPERFAMILY Galactose mutarotase-like 65 344 IPR011013 GO:0003824|GO:0005975|GO:0030246
Bisa11g2154 691 Pfam Rhamnogalacturonate lyase family 59 251 IPR010325 -
Bisa11g2154 691 Pfam Polysaccharide lyase family 4, domain III 494 682 IPR029411 -
Bisa11g2154 691 Gene3D - 491 683 - -
Bisa11g2154 691 SUPERFAMILY Starch-binding domain-like 382 482 IPR013784 GO:0030246
Bisa11g2154 691 SUPERFAMILY Galactose-binding domain-like 491 683 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2154 Bisa-ChrBisa11 45109153 45114792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2154 46 685 Polysaccharide Lyase AT4G37950 54.083 0.0 694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g2154 11 45109153 45114792 Bisa01g1477 01 24923594 24928487 CCT