Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2148 ATGGGAAGAGGGAAGATTGTGATCCGAAGAATCGACAATTCTACAAGCAGGCAGGTGACTTTCTCAAAGAGGAGGAAGGGATTGATCAAGAAGACCAAAGAGCTCGCTATCCTGTGTGATGCTGAAGTTGGACTTATCATATTCTCCAGCACCGGAAAGCTTTATGAATATGCGAACACCAGCATGAAATCAGTGATTGAGAGATATAATACATGCAAGGAGGAACATCAGCAACTGATGAATCCAGAATCTGAAGTCAAGTTTTGGCAAAGGGAGGCAGAAATATTAAGGCAGCAACTGCAGAATCTACAAGAAAACCATCGGCAATTGATGGGAGAACAGCTTTACGGTTTAAGCGTGAAAAACCTACAAGATCTAGAGAATCAGCTGGAAATGAGTCTACGAGGTGTCCGCATGAAAAAGGAACAAATACTAACAAATGAAATCCGAGAGCTGAATCGAAAGGGAAATATTATCCATCAAGAAAATGTGGAACTCTATGACAAGGTAAACCTCATTCGACAGGAAAATATGCAACTATACAAGAAGGTTTATGGCACAACAGAAGCGGCTTCAGCGAGTAGAGATGCATTCAATCCATATGGATTTCATGCTGGAGAGGATCCACAAGAACTGATCCAACTACAGCTTAGCCAGCCTGAGCAAGACACATATGAGACATCAGGCAGTGCCACAAAATGA 702 0.4217 MGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKTKELAILCDAEVGLIIFSSTGKLYEYANTSMKSVIERYNTCKEEHQQLMNPESEVKFWQREAEILRQQLQNLQENHRQLMGEQLYGLSVKNLQDLENQLEMSLRGVRMKKEQILTNEIRELNRKGNIIHQENVELYDKVNLIRQENMQLYKKVYGTTEAASASRDAFNPYGFHAGEDPQELIQLQLSQPEQDTYETSGSATK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2148 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa11g2148 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
Bisa11g2148 233 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bisa11g2148 233 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Bisa11g2148 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa11g2148 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa11g2148 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa11g2148 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa11g2148 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa11g2148 233 Coils Coil 123 143 - -
Bisa11g2148 233 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Bisa11g2148 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa11g2148 233 Coils Coil 86 113 - -
Bisa11g2148 233 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Bisa11g2148 233 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa11g2148 233 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2148 Bisa-ChrBisa11 44952477 44961439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2148 1 231 MADS-box Gene Family AT2G22630 65.106 1.79e-104 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa11g2148 K-box 1.1e-25 No_clan