Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2136 ATGAAGAGTGTTGGTTTTGCAGTTGCGGAGGAGAAAAATAATTTTCAACGGCGACAGACAATGAGATGGGAAAAGCATGATGCTTTCGGGAGAGGAAAGGCAGGCTGTCTCGGGAGAGGAAAAGTAGGAGTGCTTGATCCAGGATTTTGCCCTTCTCAGCGAGCACAGCCAAGCTTTTCTTTGTTGCTTTCTGCTTCATGGAAGGGCCTTAACGTTTCCCTTTCTTTCTTTCCTCTTTACCTTCTTTGCCTTCGCTTTGCATTTCCCTGCCAAACTTTCTCAAGAATAATTGGTCGTCTTCTCTGTCTGATCTATATCAAAGGCTTTTTAGGTTGGATGGTTGGGAAGGTCTCAGAAGTTTTGTGTACATATGTTTGCTCACAGTTTGTATATTGGAGTCTGATGTCTCCACCAGCGCTGGTAGCTGAGGAGGGGCAGAGCAATATCTCAACATTGGTATCTTCACCATCCTTGGACTCTGTATCCCATAATGGTACTGAATTAAAAGAGCGCAATTACCTGGGATTATCAGATTGTTCATCAGTTGACAGTTCTACTGTCCCAAGCATGTCGGATGAGAAAAAAGACAAGCTTAATTTAAAGGCTACAGAGTTGAGGTTGGGTCTTCCTGGCTCCCAATCTCCTGAAAGGGATTCAGATCCTTATGTATTGAGCTCAACTAAACTTGATGAGAAGCCACTATTTCCTTTGCTTCCCACAAAAGATGGAATCTGTTCATCATCCCAAAAAACAGTGGTTTCAGGCAATAAAAGAGGTTTCTCTGATACTATTGATGGGTTTCATGAAGGGAAGTTTTCTGGTAATTCAAGTGTAAATGCAATGCTACCTAGACCTTCTGGAACTCAGCCAACTTCAATGAAAGAATTACCAGCCAAGGTTTTACAGGAGCCGCCTTCTGCAGCAAATGGAACTGGTCATAACCATGCAGCTTCTTCTGTCAATGGAAGTGCACCAGCTGCTAAGGCACAGGTTGTTGGTTGGCCTCCTATAAGGTCATTCAGGAAAAACTCTTTGGCCACCACTTCAAAGAACAATGACGAAGTAGATGGAAAACCAGGTCCTGCTGCTCTCTTTGTGAAGGTCAGCATGGATGGTGCTCCGTATCTTAGGAAGGTAGACCTAAGAAGCTATACAACATACCAAGAACTGTCTTCTGCCCTAGAGAAGATGTTCAGCTGTTTTACTCTTGGTCAGTGTGGTTCTCATGGAGCTCCAGGAAGAGAAATGTTAAGTGAGAGCAAGTTAAGGGACCTTCTGCATGGTTCAGAATATGTACTCACTTATGAAGATAAAGACGGTGACTGGATGCTTGTAGGGGATGTACCATGGGAGATGTTCACTGACACATGCAAGAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTGGCACCCAGAGCCATGGAGAAATCCAAGAGCAGGAGCTAG 1452 0.4421 MKSVGFAVAEEKNNFQRRQTMRWEKHDAFGRGKAGCLGRGKVGVLDPGFCPSQRAQPSFSLLLSASWKGLNVSLSFFPLYLLCLRFAFPCQTFSRIIGRLLCLIYIKGFLGWMVGKVSEVLCTYVCSQFVYWSLMSPPALVAEEGQSNISTLVSSPSLDSVSHNGTELKERNYLGLSDCSSVDSSTVPSMSDEKKDKLNLKATELRLGLPGSQSPERDSDPYVLSSTKLDEKPLFPLLPTKDGICSSSQKTVVSGNKRGFSDTIDGFHEGKFSGNSSVNAMLPRPSGTQPTSMKELPAKVLQEPPSAANGTGHNHAASSVNGSAPAAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2136 483 MobiDBLite consensus disorder prediction 303 324 - -
Bisa11g2136 483 ProSiteProfiles PB1 domain profile. 363 467 IPR000270 GO:0005515
Bisa11g2136 483 FunFam Auxin-responsive protein 358 475 - -
Bisa11g2136 483 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 197 470 IPR003311 GO:0005634|GO:0006355
Bisa11g2136 483 Gene3D - 360 476 - -
Bisa11g2136 483 MobiDBLite consensus disorder prediction 307 324 - -
Bisa11g2136 483 SUPERFAMILY CAD & PB1 domains 361 464 - -
Bisa11g2136 483 Pfam AUX/IAA family 203 474 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2136 Bisa-ChrBisa11 44737445 44745395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2136 367 473 B3 DNA Binding Superfamily AT4G23980 29.907 1.51e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Bisa11g2136 AUX_IAA 4.3e-91 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g2136 11 44737445 44745395 Bisa11g2136 11 44737445 44745395 ECH