Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2122 ATGACGGAGTATAGGTTGCCGGCGACGATGAATCTCTGGACCGACGACAATTCCTCCGTTATGGAGGCTTTCATGAGCTCCGATCTGTCCGTACTATGGCCTCCTGCCCCTCAGCCGCAATCCTCTGCTTCCACCACCACTCCTGGACCTGACCCCACCAGACCTCTTTCTCAATCTCAGCCTTCCATTGCTCTTTTCAATCAGGAAACCCTCCAGCAGCGCCTCCAGGCCCTAATTGAAGGTGCCAGAGAGAGCTGGACCTACGCTATTTTCTGGCAGTCCTCGTACGACTATTCTGGAGCCTCCGTGCTGGGCTGGGGCGATGGCTACTACAAAGGGGAGGAAGATAAAGGGAAAGGAAAGGCCAAAACGCTGTCGTCTGCTGCTGAGCAAGAGCACCGGAAAAAGGTTCTACGGGAGCTCAATTCCCTTATTTCTGGATCCTCTGCCCCAACGGACGATGCCGTGGATGAAGAAGTCACCGACACAGAGTGGTTCTTCCTGGTTTCGATGACGCAATCATTCGTTAATGGCGACGGCCTACCGGGTCAGGCGTTTTATAATTCGACCCCTGTATGGGTCGTCGGTGGAGAGAGGTTATCGAGTTCGACGTGCGAGAGGGCGAGGCAGGGGCAGGTTTTCGGGCTTCAGACCTTGGTGTGCATACCGTCGGCGAATGGGGTGGTAGAGTTGGGGTCTACTGAGCTGATTTTCCAGAACTCCGACTTGATGAATAAGGTGAGGGTCTTGTTCAATTTCAACAGCCCGGAAGGTGGTTCGTGGCCTCTGACCACTACTACTGCCGATCAAGGTGAGAACGACCCTTCCTCTCTTTGGCTTAATGATCCCTCTACTGGAATTGAAATCAGAGATTCAGCGAACACTACTGTTCCCACTTCGGTTCCGAGCTCTAATAATAGTCACAACATTCAGACAATCGCCAAGCCGATGCAATTCGAAACCCCAGGTTCTAGTACCTTAACTGAAGCCCCAAGTGTGGTTCACATCCCCAACACTCACTATAATCAGCAGCGGCAACAACAGCCACAACAATCGCAGCAGAACCAGGGGTTCTTTTCTAGGGAATTGAACTTTTCGGAATATGGGTTGGACTCAAATGGCCTAAAGAACGGGAATTCAAATTCCTTGAAGCCGGAATCTGGTGAGATTTTGAATTTTGGAGAGAGCAAGAGGAGCTCTTATGGTGGAAATGGGAATTTCTTCTCGGGTCAGAGTCCGTTCGTCGCAGACGACAACAAGAAGAGGAGGTCCCCAACGTCTAGGGGTAGTAACGACGAAGGCATGCTTTCCTTCACTTCTGGTGTGATTTTGCCCACTTCTAATATGAAGTCCAGTGGCGGCGGCGGCGGCGATTCCGACCAGTCGGATCTTGAAGCTTCTGTGGTGAAAGAAGCGGATAGTAGCAGAGTGGTGGAACCAGAAAAAAAACCTCGCAAAAGAGGACGAAAGCCTGCAAATGGCAGAGAGGAGCCTCTGAATCATGTGGAAGCAGAGAGGCAGAGGAGAGAGAAGCTGAATCAGAGGTTCTACGCGCTTCGTGCGGTGGTCCCAAATGTGTCAAAGATGGACAAGGCATCCCTCCTAGGCGATGCCATATCTTACATTAACGAGCTCAAGTCGAAGCTTCAAAACTTAGAACTAAACAAGGAGGAGTTGCAGAAGGAATTGGATTCAGTGAAGAAGGAACTCGAGCTGGCCAGTAATAAAGATTCGCGTGCACCTCCATCAGATAAAGAACAGAAGAGCTCCAATAACCATGGAAGCAGCAAGCTAATTGATTTAGATATCGACGTGAAGATCATAGGGTGGGATGCAATGATTCGAATCCAATGTAGCAAGAAGAACCATCCCGCAGCGAGGTTAATGGCAGCTTTGGAGGAGCTAGACCTGGAAGTGAACCACGCGAGTGTGTCGGTGGTGAATGATTTGATGATCCAACAGGCGACAGTGAAGATGGGAAGTCGATTTTACACGCAGGAGCAGCTCCGGTTAGCACTGTCGTCCAAGGTTGGCGATGTGCGATAG 2046 0.5073 MTEYRLPATMNLWTDDNSSVMEAFMSSDLSVLWPPAPQPQSSASTTTPGPDPTRPLSQSQPSIALFNQETLQQRLQALIEGARESWTYAIFWQSSYDYSGASVLGWGDGYYKGEEDKGKGKAKTLSSAAEQEHRKKVLRELNSLISGSSAPTDDAVDEEVTDTEWFFLVSMTQSFVNGDGLPGQAFYNSTPVWVVGGERLSSSTCERARQGQVFGLQTLVCIPSANGVVELGSTELIFQNSDLMNKVRVLFNFNSPEGGSWPLTTTTADQGENDPSSLWLNDPSTGIEIRDSANTTVPTSVPSSNNSHNIQTIAKPMQFETPGSSTLTEAPSVVHIPNTHYNQQRQQQPQQSQQNQGFFSRELNFSEYGLDSNGLKNGNSNSLKPESGEILNFGESKRSSYGGNGNFFSGQSPFVADDNKKRRSPTSRGSNDEGMLSFTSGVILPTSNMKSSGGGGGDSDQSDLEASVVKEADSSRVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQNLELNKEELQKELDSVKKELELASNKDSRAPPSDKEQKSSNNHGSSKLIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALEELDLEVNHASVSVVNDLMIQQATVKMGSRFYTQEQLRLALSSKVGDVR 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2122 681 MobiDBLite consensus disorder prediction 402 506 - -
Bisa11g2122 681 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 496 545 IPR011598 GO:0046983
Bisa11g2122 681 FunFam Transcription factor bHLH13 489 563 - -
Bisa11g2122 681 SMART finulus 502 551 IPR011598 GO:0046983
Bisa11g2122 681 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 71 251 IPR025610 -
Bisa11g2122 681 Coils Coil 535 576 - -
Bisa11g2122 681 MobiDBLite consensus disorder prediction 429 458 - -
Bisa11g2122 681 MobiDBLite consensus disorder prediction 35 59 - -
Bisa11g2122 681 MobiDBLite consensus disorder prediction 369 388 - -
Bisa11g2122 681 MobiDBLite consensus disorder prediction 571 595 - -
Bisa11g2122 681 Gene3D - 488 576 IPR036638 GO:0046983
Bisa11g2122 681 PANTHER MYC 44 676 IPR045084 GO:0003700|GO:0006355
Bisa11g2122 681 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 499 566 IPR036638 GO:0046983
Bisa11g2122 681 MobiDBLite consensus disorder prediction 464 506 - -
Bisa11g2122 681 Pfam Helix-loop-helix DNA-binding domain 500 545 IPR011598 GO:0046983
Bisa11g2122 681 CDD bHLH_AtAIB_like 493 569 - -
Bisa11g2122 681 MobiDBLite consensus disorder prediction 571 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2122 Bisa-ChrBisa11 44465434 44467479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2122 1 678 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 57.410 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa11g2122 bHLH-MYC_N 2.6e-56 CL0161