Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2111 ATGGCGACTCTAGAATCAGGTCTCACAGTCCTCGCATCTTTCCATTGTTCAAATGAGTACTGTTCATCTTCCAAGCCACTCGGTTCCATGAAGCTCTCCTCCAGGACACTCTTACGTTCTCTCTTTCCCCTTTCCCACGGTTCCGTCTTCTCTCCCTCTCTTTCCTCCTTCGATTCGAGCAGAAGCCTTTGCTTCGAATTATGCTCTGCCCTGCAAGAGGCAGCTAGAGAAACAGAAGAAAAAGCAGAGCTAACCCAGGAAACCAACGTCAAGAAGAAGCTTTACGTCGCTAATTTACCTTGGTCCCTCTCGGCCGTGGACATCAAGACCCTCTTTGGTCAATGCGGAACTGTGTCCGACGTCGAGATAATAAAAAGCAATAATGGGAGGAGCAGAGGAATTGCTTTCGTCACTATGGCTTCAGGGGAAGAGGCCCAGGCTGCTATTGCTAAATTCGATTCACAAGAATTATCAGGCCGGGTAATTAAGGTAGAGCATGCAAAGAGATTCAAGAGACCTCCTCCTCCACGTCCTCCAGCTTCAAGTACCCCTGGTGGTGAGACACGCCATAAAATTTATGCTTCCAATCTTGCATGGAAAGCAAGATCTTCCCATCTCAGAGAATTCTTCACCCAGAATTTCAAAGCACCAGCTTCAGCCAGGGTTGTCTTTGACAGCCCTTCTGGAAGGTCTGCTGGGTATGGATTTGTTTCATTTGCTACAATGGAAGAAGTAGAGGCTGCCATTTCTACTTTGGATGGCAAGGAATTAATGGGACGACCACTTCGCCTAAAATTCAGTCAAAGGACCGTTGAAGAATCTGGGAATGAGAAAGAGGAAGAGCAAGGCGATGATGATCAGCTGGAAGAATCATAG 876 0.4726 MATLESGLTVLASFHCSNEYCSSSKPLGSMKLSSRTLLRSLFPLSHGSVFSPSLSSFDSSRSLCFELCSALQEAARETEEKAELTQETNVKKKLYVANLPWSLSAVDIKTLFGQCGTVSDVEIIKSNNGRSRGIAFVTMASGEEAQAAIAKFDSQELSGRVIKVEHAKRFKRPPPPRPPASSTPGGETRHKIYASNLAWKARSSHLREFFTQNFKAPASARVVFDSPSGRSAGYGFVSFATMEEVEAAISTLDGKELMGRPLRLKFSQRTVEESGNEKEEEQGDDDQLEES 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2111 291 Gene3D - 68 173 IPR012677 -
Bisa11g2111 291 Gene3D - 174 285 IPR012677 -
Bisa11g2111 291 Coils Coil 68 88 - -
Bisa11g2111 291 SMART rrm1_1 93 165 IPR000504 GO:0003723
Bisa11g2111 291 SMART rrm1_1 191 265 IPR000504 GO:0003723
Bisa11g2111 291 SUPERFAMILY RNA-binding domain, RBD 173 271 IPR035979 GO:0003676
Bisa11g2111 291 PANTHER OS02G0815200 PROTEIN 46 267 - -
Bisa11g2111 291 MobiDBLite consensus disorder prediction 277 291 - -
Bisa11g2111 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 269 IPR000504 GO:0003723
Bisa11g2111 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 163 IPR000504 GO:0003723
Bisa11g2111 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 263 IPR000504 GO:0003723
Bisa11g2111 291 MobiDBLite consensus disorder prediction 266 291 - -
Bisa11g2111 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 169 IPR000504 GO:0003723
Bisa11g2111 291 CDD RRM_SF 94 165 - -
Bisa11g2111 291 MobiDBLite consensus disorder prediction 166 189 - -
Bisa11g2111 291 SUPERFAMILY RNA-binding domain, RBD 91 186 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2111 Bisa-ChrBisa11 44348067 44351405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2111 93 286 Eukaryotic Initiation Factors Gene Family AT2G23350 29.353 9.44e-10 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g2111 11 44348067 44351405 Bisa11g2111 11 44348067 44351405 ECH