Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2110 ATGGCTGCAGTTGCCAACCCAAGAACCTGGATTCCATATACAAACTACAAAGACTGTTCTCAAGGCTTTTGCAGTGTGTACTGTCCTCAATGGTGTTACATAGTGTACCCTCCTCCTCCTCCTCCTCCTTCCTTTGAATTCCCCGAAGACGACGATTCAACCCCTAATTTGTCTCCTCTCGTCATAGCCATCATTGGGATCTTGGCCAGTGCTTTTCTGCTTGTGAGTTACTACACTTTCATATCCAAGTACTGCGGAAACAGAGGATCTGATTCTTCACGCACCCAAAACACAAACGATGAAATTGAAGAAAACAATCACAACCCTTCACTCCACGAGCCGTGGTACGTCTCCACCAATGGATTAGACGAAGCTCTGATCAAGTCCATTACTGTGTGTAAGTACAAGAAAGGAGATGGGTTGGTCGGAGTCAGGGATTGCTCTGTTTGTCTGAGTGAGTTTCAAGAAGATGAAAGTGTCAGACTTTTGCCCAAATGTAGCCACGCTTTTCACCTGCCTTGTATTGACCAGTGGCTCAAATCTCACTCCAACTGCCCTCTCTGTCGTGCCCATATCTTCTCCTTCAATGCTTCCACCACTCAACCTCCTCCTCCCCCTGCCATTGAAGAAGCCTCTTCACAGAACGAAAATATTCAGAACGTGAGTGAAGAAAATGTAGGCGTCGAGATGGGTGGGGATGTGGAGGAACGAAGAAAGACTGCAATGCGTGCTTTTAGTGATTTGGGGTTTTTGCAGGGAAGACACAGAATGATTGAGATTAGAGATGAAGATGAAGAAGAAGGCATACGAAGGTCAGTGTCTATGGATCATTCGTTTCGAGTAGAAGGGCCTAATGAAGCAGGTCCATCCAAGAGATCGCAAGGAGAAAGTAGCAAGTCTGCGTCGAACTACAGAAGAAGGGGATTGCACTGTGTGTTGAGTCCAATCTCAATGAAGAGATCGTTTTCCAGCGCAAGATTCTCGTTTACCAGAAGTGGTAGAGGAAGACAGGGGATTATCCCTGTTTGA 1029 0.4626 MAAVANPRTWIPYTNYKDCSQGFCSVYCPQWCYIVYPPPPPPPSFEFPEDDDSTPNLSPLVIAIIGILASAFLLVSYYTFISKYCGNRGSDSSRTQNTNDEIEENNHNPSLHEPWYVSTNGLDEALIKSITVCKYKKGDGLVGVRDCSVCLSEFQEDESVRLLPKCSHAFHLPCIDQWLKSHSNCPLCRAHIFSFNASTTQPPPPPAIEEASSQNENIQNVSEENVGVEMGGDVEERRKTAMRAFSDLGFLQGRHRMIEIRDEDEEEGIRRSVSMDHSFRVEGPNEAGPSKRSQGESSKSASNYRRRGLHCVLSPISMKRSFSSARFSFTRSGRGRQGIIPV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2110 342 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Bisa11g2110 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 196 IPR013083 -
Bisa11g2110 342 SUPERFAMILY RING/U-box 146 195 - -
Bisa11g2110 342 MobiDBLite consensus disorder prediction 262 277 - -
Bisa11g2110 342 FunFam RING-H2 finger protein ATL54 122 195 - -
Bisa11g2110 342 Pfam Ring finger domain 146 189 IPR001841 -
Bisa11g2110 342 MobiDBLite consensus disorder prediction 290 304 - -
Bisa11g2110 342 MobiDBLite consensus disorder prediction 88 109 - -
Bisa11g2110 342 PANTHER RING-H2 FINGER PROTEIN ATL16 42 294 IPR044600 GO:0016567|GO:0016740
Bisa11g2110 342 MobiDBLite consensus disorder prediction 262 306 - -
Bisa11g2110 342 CDD RING-H2_EL5-like 146 189 - -
Bisa11g2110 342 SMART ring_2 147 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2110 Bisa-ChrBisa11 44338864 44339892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2110 5 342 C3H Transcription Factor Family AT5G17600 41.689 1.33e-70 222