Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2103 ATGGATTATGGTCGAGATGGGAACGTTGTTCAAATAATCACCGGTGGTGGGAATGAAAATTGGCCCAGCGACCAGGCCGTTTGGGCGACAGAAGAAGATTACCGATTCTGGAATAACGGCGACGCTGACACTCCCACGAACTCGAATTACGATCAAAGGCAGTCCCAATCGAGATCGGGAAGCGAACCCCCTAACAAGAAATCTAGAAATTCTCAGGATGTGACTTCGTCGAATCGGTCAAAGGCAATAGGAAAAATGTTCTTCAAAACGAAGCTTTGTTGCAAATTCCGGGCTGGTACGTGCCCGTATATCACAAACTGCAATTTTGCTCATAGTATCGAAGAGCTTCGCCGGCCACCTCCGAATTGGCAAGAAATCGTGGCTGCCCACGAAGAGGAAACATCGGTAATGTCGGAACCGAGGGAAGAGTTTCAAATTCCGTCCATTGCGTTGTCGGGGTTTGCAGGGGAGACGCAGAGGGCGTATAAAGGTCGACATTGCAAGAAGTTTTACACGGAAGAAGGGTGTCCATATGGAGAGAGCTGTACATTCCTCCATGATGAGCAATCCAGGAATCGAGAGAGTGTGGCTATAAGCTTAGGCCCTGGTGGGTATGGCGGTGCTGGGAATGGATCTACTTCCAAGCCCTCTAATTGGAAAACAAGGATTTGCAATAAGTGGGAGATGACTGGGTATTGCCCATTTGGAAATAAATGCCATTTTGCTCATGGTGCTGCAGAACTGCACCGATATGGAGGGGGTCCTATGGAGACAGAAAATAGAGACACTGCTTCTGCTGCTGCTCCAGACACAAAGCAGGGAGGGGCACCTTCAAAGACTCCCCCTGATAATGTGGTTGCAGCAGCTACTCCAGTTGCTCATTCTGATGTCTATCATATTGGAGTTCCTTCACAACGGTCGTCCATTGTAATTCAGAGGCCAGGTCAGAGAGCTCATCAGAAGTGGAAGGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACTTGGAATAA 1023 0.4809 MDYGRDGNVVQIITGGGNENWPSDQAVWATEEDYRFWNNGDADTPTNSNYDQRQSQSRSGSEPPNKKSRNSQDVTSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEETSVMSEPREEFQIPSIALSGFAGETQRAYKGRHCKKFYTEEGCPYGESCTFLHDEQSRNRESVAISLGPGGYGGAGNGSTSKPSNWKTRICNKWEMTGYCPFGNKCHFAHGAAELHRYGGGPMETENRDTASAAAPDTKQGGAPSKTPPDNVVAAATPVAHSDVYHIGVPSQRSSIVIQRPGQRAHQKWKGPDKISRIYGDWIDDLE 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2103 340 PANTHER CCCH ZINC FINGER/TIS11-RELATED 208 265 IPR045877 GO:0003729
Bisa11g2103 340 SUPERFAMILY CCCH zinc finger 160 189 IPR036855 GO:0046872
Bisa11g2103 340 MobiDBLite consensus disorder prediction 40 78 - -
Bisa11g2103 340 FunFam zinc finger CCCH domain-containing protein 15-like 212 251 - -
Bisa11g2103 340 MobiDBLite consensus disorder prediction 34 78 - -
Bisa11g2103 340 Gene3D - 211 250 - -
Bisa11g2103 340 Gene3D - 82 118 - -
Bisa11g2103 340 Pfam CCCH-type zinc finger 165 187 IPR041367 -
Bisa11g2103 340 MobiDBLite consensus disorder prediction 252 285 - -
Bisa11g2103 340 FunFam Zinc finger CCCH domain-containing protein 83 119 - -
Bisa11g2103 340 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
Bisa11g2103 340 MobiDBLite consensus disorder prediction 198 218 - -
Bisa11g2103 340 SMART c3hfinal6 161 188 IPR000571 GO:0046872
Bisa11g2103 340 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Bisa11g2103 340 SMART c3hfinal6 218 245 IPR000571 GO:0046872
Bisa11g2103 340 SUPERFAMILY CCCH zinc finger 85 118 IPR036855 GO:0046872
Bisa11g2103 340 Gene3D - 155 201 - -
Bisa11g2103 340 SUPERFAMILY CCCH zinc finger 215 249 IPR036855 GO:0046872
Bisa11g2103 340 ProSiteProfiles Zinc finger C3H1-type profile. 161 189 IPR000571 GO:0046872
Bisa11g2103 340 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 112 IPR000571 GO:0046872
Bisa11g2103 340 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 219 244 IPR000571 GO:0046872
Bisa11g2103 340 ProSiteProfiles Zinc finger C3H1-type profile. 218 246 IPR000571 GO:0046872
Bisa11g2103 340 FunFam Zinc finger, CCCH-type 155 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2103 Bisa-ChrBisa11 44258629 44261867 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2103 220 248 C3H Transcription Factor Family AT1G68200 62.069 2.83e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa11g2103 zf-CCCH 1.1e-10 CL0537