Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2100 ATGGAAAACCGGCGTTACCTCGGTAAGTTATTATCAATAACTAATCTTTTGATGTCAGCGAATCAAGGAAAGGAAACAGGGCTTCAAAGGTTTCTGGCATTTTCCTTCCAATCAAAAAACAAGATGGGGAAAAGGAAACCCAAGGAGCCTCAAGAAACCCCCAAAAGCAACGGTACCTCGGCTTCTTCCGACATCTTTAACGAGCTATTTGGGAACGTGTCTGAACAGAACGCCAATTCTTCTCTATTCTCAGAGAAAAACCCCTTTAAGAGGAAGCCTCTGGAATCTAATTCAAGCTTCGATCCAACCAAAAATATTGATAACGCTAGTAACGCGGTCTCCTACAACCATGATTCTGACGAGCTGAAGAAGAGAAAGAGAAGCAAAGAGAAGAAATCGTCTGTTGATTCACATAATATCCTTGAAGCGTCTGGGAAGAAGTTGAAACCGGGTTCCGATACGAGCCTTAATTTTGGCTCCCAACCGGATAGAGTACCGCAGGAAGATGAGACTGAAGACTCTGATTTGGGTGCGCAGGCGACTGCATTGTCGAAGAAAGAAAATATCGTGTCCGAGGAAGGGGCGGGTAAAGGCGAGCTTGTGAAAGAGGGCAAGGAGAAGAGGAAGAAGAAGAGAAAAAGGGATGAAGTTGAGAATGAGTGGGAAGCGAAGAAGTATGGAGCAGTGGAGGAAGGGGAAGGTGAATTGGGAAATAAAGTTGTTGGGACCAAGAGGAAAACGGTGGATAATCCAGCTGACATGCTGGTTACAAATGAAGGTTTCGATGATGAAAATAAGCTTTTAAGAACCATATTTGTTGGGAATTTGCCGCTCAGGGTGAAAAAGAAGACTTTACTGAAGGAGTTTAAGAATTTTGGAGAGGTTGAGTCTGTGAGGATTCGTTCTGTTCCAATACTGGATACCAAAAAACCTAGGAAGGGAGCTATCCTTTCTAAGAAAATCAATGATGCTGCTGATGGTGTTCATGCATACATTGTTTTTAAAACAGAGCAGTCCGCTCAGGCTTCCTTGTCCCATAACATGGCTGTGGTAGGAGGAAATCACATTCGTGTTGATGTAGCATGCCCGCCTCGCAAGAAACATAAAGGAGAGAATGCTCCACTCTATGACAACAAGAGAACTGTTTTTGTGGGTAACCTGCCTTTTGATGTCAAGGATGAAGAACTATATAAACTATTTTGTGGTATGGCCAACCTAGAATCCAGCATAGAAGCTGTTAGAGTCGTTAGAGATCCTCATATGAATATTGGGAAGGGTATTGCCTATGTGCTGTTCAAAACAAGGGAAGCTGCTAATTTTGTTGTTAAGAAACGGAGCTTGAAGCTTCGAGACCGAGAGTTGAGACTCTCTCATGCCAGAGCAGATGCCACCCCATCTAGGAGGCCAAACTTGTCACCAGCACAAACTCCGGGTACCCCTGCAAAAAAGTCAGCTATAGCTTCTAGGTCTCCTTCTAGCAGTAATAGCAGGGCTAACAGGAAATCTAGCATGTCTTACCAAGGCTTGCGAGCAACCAAAACTGTTGTCCATAAGAAATCGAGAACCCAGGGAAGAGAGCAACCAACAGAACGCAAGACTAAAAGACCCGCAGTTGCTGCTAGGAAGGACAAATTAAAATCAAAATTGGTCAAGGATGATGGTGCATCACAAGCAGTAGGAGTAAAACGCAAGCTTGATGGTCAAACTCCAGATGGCTCCCGACAAAATAAGAAATTTAAAAAGAATAGTTAG 1752 0.4366 MENRRYLGKLLSITNLLMSANQGKETGLQRFLAFSFQSKNKMGKRKPKEPQETPKSNGTSASSDIFNELFGNVSEQNANSSLFSEKNPFKRKPLESNSSFDPTKNIDNASNAVSYNHDSDELKKRKRSKEKKSSVDSHNILEASGKKLKPGSDTSLNFGSQPDRVPQEDETEDSDLGAQATALSKKENIVSEEGAGKGELVKEGKEKRKKKRKRDEVENEWEAKKYGAVEEGEGELGNKVVGTKRKTVDNPADMLVTNEGFDDENKLLRTIFVGNLPLRVKKKTLLKEFKNFGEVESVRIRSVPILDTKKPRKGAILSKKINDAADGVHAYIVFKTEQSAQASLSHNMAVVGGNHIRVDVACPPRKKHKGENAPLYDNKRTVFVGNLPFDVKDEELYKLFCGMANLESSIEAVRVVRDPHMNIGKGIAYVLFKTREAANFVVKKRSLKLRDRELRLSHARADATPSRRPNLSPAQTPGTPAKKSAIASRSPSSSNSRANRKSSMSYQGLRATKTVVHKKSRTQGREQPTERKTKRPAVAARKDKLKSKLVKDDGASQAVGVKRKLDGQTPDGSRQNKKFKKNS 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2100 583 MobiDBLite consensus disorder prediction 150 164 - -
Bisa11g2100 583 CDD RRM1_RBM34 269 359 - -
Bisa11g2100 583 SUPERFAMILY RNA-binding domain, RBD 263 370 IPR035979 GO:0003676
Bisa11g2100 583 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 363 IPR000504 GO:0003723
Bisa11g2100 583 Gene3D - 265 369 IPR012677 -
Bisa11g2100 583 SUPERFAMILY RNA-binding domain, RBD 376 474 IPR035979 GO:0003676
Bisa11g2100 583 MobiDBLite consensus disorder prediction 93 116 - -
Bisa11g2100 583 Gene3D - 371 466 IPR012677 -
Bisa11g2100 583 MobiDBLite consensus disorder prediction 567 583 - -
Bisa11g2100 583 MobiDBLite consensus disorder prediction 53 86 - -
Bisa11g2100 583 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 364 532 - -
Bisa11g2100 583 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 382 454 IPR000504 GO:0003723
Bisa11g2100 583 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 313 IPR000504 GO:0003723
Bisa11g2100 583 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 380 461 IPR000504 GO:0003723
Bisa11g2100 583 MobiDBLite consensus disorder prediction 458 583 - -
Bisa11g2100 583 MobiDBLite consensus disorder prediction 39 220 - -
Bisa11g2100 583 MobiDBLite consensus disorder prediction 190 220 - -
Bisa11g2100 583 Coils Coil 200 220 - -
Bisa11g2100 583 SMART rrm1_1 381 457 IPR000504 GO:0003723
Bisa11g2100 583 SMART rrm1_1 270 359 IPR000504 GO:0003723
Bisa11g2100 583 MobiDBLite consensus disorder prediction 468 510 - -
Bisa11g2100 583 MobiDBLite consensus disorder prediction 117 137 - -
Bisa11g2100 583 CDD RRM2_RBM34 381 457 IPR034221 -
Bisa11g2100 583 MobiDBLite consensus disorder prediction 519 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2100 Bisa-ChrBisa11 44189462 44194806 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2100 271 460 Eukaryotic Initiation Factors Gene Family AT1G22760 26.500 2.59e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g2100 11 44189462 44194806 Bisa11g2100 11 44189462 44194806 ECH