Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2090 ATGAGCTTTCAGGATATCGAAGCCGGCCGGCCTTTCGCTTCGAGGCGGGGCCTGATGAATGGCAAACAAGACCCTACACAGGCGGTGGCGTCCGGTGTATTTCAGATCAACACAGCCGTGTCCACGTTTCAGAGGCTCGTCAATACCCTTGGAACCCCGAAAGACACCCCCGATCTCCGCGAGAAGTTGCACAAGACAAGACTACATATTGGGCAATTAGTGAAGGATACATCAGCTAAACTTAAGCAAGCTAGCGAAATAGATCAGCATGTTGAAGTTAATGCAAGCAAGAAGATAGCAGATGCCAAACTTGCAAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGGCTTGCAGCTGAGAGGGAGACAGCTTACAGTCCTTTTGTTCCACAGACAGTTCTTCCCTCTAGCAATACAGCTAGCGAGGTTGATGTTAGTTTTGATAAAAATGCGGAACAGCGTACTCTTCTTGTTCAATCCAGAAGGCAGGAGGTCTTGATGTTGCATAATGAGATTGCATTTAATGAGGCTGTCATTGAGGAAAGAGAGCAAGGCATTCAAGAAATCCAGCAGCAAATTGGTGAAGTAAATGAGATTTTCAAAGATCTCGCTGTGCTAGTCCATGAGCAAGGAGCCATGATTGATGATATTGGCTCCAACATTGAGAACTCACATGCAGCAACTGCACAAGCAAAATCTCAACTAGTCAAAGCTGCAAAGACCCAAAAATCAAATTCATCTCTGACATGCTTACTCTTGGTGATATTTGGGATTGTGCTTCTCATCGTAATCATAGTTCTTGCTGCTTAG 822 0.4501 MSFQDIEAGRPFASRRGLMNGKQDPTQAVASGVFQINTAVSTFQRLVNTLGTPKDTPDLREKLHKTRLHIGQLVKDTSAKLKQASEIDQHVEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYSPFVPQTVLPSSNTASEVDVSFDKNAEQRTLLVQSRRQEVLMLHNEIAFNEAVIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIENSHAATAQAKSQLVKAAKTQKSNSSLTCLLLVIFGIVLLIVIIVLAA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2090 273 PANTHER SYNTAXIN 26 265 IPR045242 -
Bisa11g2090 273 CDD SNARE_Qa 200 241 - -
Bisa11g2090 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Bisa11g2090 273 Pfam SNARE domain 217 268 IPR000727 -
Bisa11g2090 273 SMART SynN_4 14 127 IPR006011 GO:0016020
Bisa11g2090 273 CDD SynN 19 148 IPR006011 GO:0016020
Bisa11g2090 273 SUPERFAMILY t-snare proteins 19 235 IPR010989 GO:0016020|GO:0016192
Bisa11g2090 273 SMART tSNARE_6 175 242 IPR000727 -
Bisa11g2090 273 Gene3D - 20 133 - -
Bisa11g2090 273 Gene3D - 172 273 - -
Bisa11g2090 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bisa11g2090 273 FunFam Syntaxin-22 like 20 133 - -
Bisa11g2090 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Bisa11g2090 273 FunFam Syntaxin-22 like 173 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2090 Bisa-ChrBisa11 44016389 44019898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2090 1 261 SNARE and Associated Proteins AT5G46860 77.778 1.64e-144 404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g2090 11 44016389 44019898 Bisa11g2090 11 44016389 44019898 ECH