Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2081 ATGTATGGGGATTGCCAAGTGATGTCAAGTATGGGAGGGAACGTAGTAGTGAACTCTGAAACCCTCTTCTCTTCCTCCATTCAAAACTCAACTTTCCAACCTTTCCATCCCCTACCTCCCTTGAAAGAAGAAGATGGGATGATGATGATGATGAGAGGGAAGGACGAGATCATGGAGAGTGGGTCAGGAAGCGAGCAAGCCGATCAAGACATTAAGTCGGGGAACGAGCAAGAGAGTGGTGAACAGCCTCCCAAGAAGAAACGTTACCACAGGCACACAGCTCGTCAGATCCAGGAAATGGAAGCTTTGTTCAAGGAATGTCCACACCCAGACGACAAGCAGAGGATGAAGCTGAGTCAAGACCTAGGGCTGAAGCCACGCCAGGTCAAGTTCTGGTTTCAAAATCGTCGAACCCAGATGAAGGCACAACATGATAGATCGGATAATGTGATACTTAGAGCAGAAAACGAGAACCTGAAGAATGAGAACTATCGTCTACAAGCGGCGTTACGTAATATTATGTGTCCAAATTGTGGTGGTCCGGCGATGATGGGGGCTGATCTGGGCTCCGATGAACACCAGCTTCGCCTCGAAAATGCTCGCCTCAGAGAAGAGTTAGAACGTGTGTGTTGTCTGACGTCAAGATACACAGGCCGGCCAATGCAAACAATGGCGTCAACTCCTCTTCTGGCTCCTTCACTGGATTTGGACATGAACATATACTCCAGGCACTTCTCTGATCGTATTTCCTCTTGTACTACAGAGATGATTCCTGTTCCAATGCTGCCTCCGCCGGAGACCTCGCCATTCCCAGAGGCTGGTCTCTTACTCATGGAGGATGACAAGTCTCTGGCTTTGGAGCTCGCTGTGTCGTCCATGGACGAACTCGTCAAGATGTGTCACGCGTCCGACCCGCTTTGGATCAGAAACAGCGAGAATGAAAGGGAAGTGCTGAATTTTGAGGAGCACGCGAGGCTGTTTCAGTGGCCTATGAATAACCTCAAGAACCATAACTCGTCCAGTGAGCTTAGGACTGAAGCCACCCGTGACACTGCTGTGGTTATCATGAATACTGTCACTCTTGTTGACGCCTTTCTTGATGCTCTTAAGTGGATGGAATTGTTCCCCACAATTGTTTCTAGAGCAAAAACTGTGCAAGTTATATCTTCTGGTGCTTCTGGCCATGCAAGCGGGTCTCTCCAGCTGATATACGCAGAACTTCAAGTGATGTCTCCCTTGGTGTCCACTCGGGAGACTCATTTCCTTCGTTACTGCCATCAAAACGCTGAGCAAGGAACGTGGGCCATTGTTGACTTTCCTCTTGACAGCTTCCATGAGAACTTTCACCATTCATATCCCAGATACTGCAGGCGACCCTCCGGCTGTGTGATCCAAGATATGCCTAATGGGTACTCGAGGGTGACGTGGATTGAGCATGCAGAGGTAGAAGAGAAACCAGTGCATCAGATATTCAGCAACTATGTGTACAGTGGCATGGCGTTTGGCGCCCAACGCTGGCTCGGTGTTTTGCAGAGACAATGTGAGAGAGTCGCCAGCCTCATGGCTAGGAACATTTCAGACCTTGGAGTGATTCCGTCACCAGAAGCGAGAAAGAACTTGATGAAGCTGGCTCAGAGGATGATAAGAACGTTCAGCCTTAACATGAGCACGTCGGGAGGTCAATCATGGACGGCTTTATCAGATTCGCCTGAAGACAGTGTGAGGATCACAACGAGGAAGATGACAAGCCCAGGCCAACCCAATGGCGTCATCCTCAGTGCCGTCTCCACCACCTGGCTTCCCTATTCCCACTCCAGGGTCTTTGAACTCCTCAAGGACGAACGTCGCAGATCTCAGTTGGATTTTCTCTCAAATGGGAACTCTCTGCATGAAGTGGCTCACATTGCAAACGGCTCGCATCCAGGAAATTGCATCTCCCTCTTACGCATAAATGTAGCGAGCAACTCATCGCAGAACGTAGAGCTAGTGCTGCAAGAGAGCTGTACCGATCAGTCAGGGAGTCTAGTGGTGTACGCCACCATCGACGTGGAGTCGATCCAGCTCGCCATGAGCGGCGAGGACCCATCCTGCATAGCCCTTCTTCCCCAAGGCTTCGTCATCGTTCCAGCCACATCTAGCGTCGACGCATCCAGCGTAGCCATCGACGGCAATACTGCCGAACCAGCCTCCACCGGACCTCCCCCACCACCGGCTAACCCAGGGTGCCTTCTCACGGTGGGGCTGCAAGTGCTGGCCAGCACGATCCCTTCTGCGAAGCTCAATCTCTCCAGCGTCACCGCCATTAATAACCACCTCTGCAATACTCTGCACCAGATTGAAGCCGCTCTTTGCTCTGACAATGCCAGCTTCGTTGGGTCTTGCACTGAACCCACAACTAGTGCCACTCCTAAGCAATAG 2418 0.5112 MYGDCQVMSSMGGNVVVNSETLFSSSIQNSTFQPFHPLPPLKEEDGMMMMMRGKDEIMESGSGSEQADQDIKSGNEQESGEQPPKKKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQDLGLKPRQVKFWFQNRRTQMKAQHDRSDNVILRAENENLKNENYRLQAALRNIMCPNCGGPAMMGADLGSDEHQLRLENARLREELERVCCLTSRYTGRPMQTMASTPLLAPSLDLDMNIYSRHFSDRISSCTTEMIPVPMLPPPETSPFPEAGLLLMEDDKSLALELAVSSMDELVKMCHASDPLWIRNSENEREVLNFEEHARLFQWPMNNLKNHNSSSELRTEATRDTAVVIMNTVTLVDAFLDALKWMELFPTIVSRAKTVQVISSGASGHASGSLQLIYAELQVMSPLVSTRETHFLRYCHQNAEQGTWAIVDFPLDSFHENFHHSYPRYCRRPSGCVIQDMPNGYSRVTWIEHAEVEEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIPSPEARKNLMKLAQRMIRTFSLNMSTSGGQSWTALSDSPEDSVRITTRKMTSPGQPNGVILSAVSTTWLPYSHSRVFELLKDERRRSQLDFLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQNVELVLQESCTDQSGSLVVYATIDVESIQLAMSGEDPSCIALLPQGFVIVPATSSVDASSVAIDGNTAEPASTGPPPPPANPGCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTLHQIEAALCSDNASFVGSCTEPTTSATPKQ 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2081 805 MobiDBLite consensus disorder prediction 58 92 - -
Bisa11g2081 805 Gene3D - 70 154 - -
Bisa11g2081 805 SMART START_1 287 516 IPR002913 GO:0008289
Bisa11g2081 805 Pfam START domain 288 516 IPR002913 GO:0008289
Bisa11g2081 805 SUPERFAMILY Bet v1-like 280 518 - -
Bisa11g2081 805 ProSiteProfiles 'Homeobox' domain profile. 83 143 IPR001356 GO:0003677
Bisa11g2081 805 Gene3D - 294 505 IPR023393 -
Bisa11g2081 805 ProSiteProfiles START domain profile. 278 519 IPR002913 GO:0008289
Bisa11g2081 805 Coils Coil 149 172 - -
Bisa11g2081 805 CDD START_ArGLABRA2_like 282 515 - -
Bisa11g2081 805 SUPERFAMILY Bet v1-like 545 780 - -
Bisa11g2081 805 FunFam Homeobox-leucine zipper protein HDG1 73 159 - -
Bisa11g2081 805 CDD homeodomain 86 144 IPR001356 GO:0003677
Bisa11g2081 805 SMART HOX_1 84 147 IPR001356 GO:0003677
Bisa11g2081 805 MobiDBLite consensus disorder prediction 71 85 - -
Bisa11g2081 805 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 82 783 IPR042160 -
Bisa11g2081 805 Pfam Homeodomain 86 141 IPR001356 GO:0003677
Bisa11g2081 805 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Bisa11g2081 805 SUPERFAMILY Homeodomain-like 71 143 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2081 Bisa-ChrBisa11 43901506 43906992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2081 8 783 Homeobox Transcription Factor Family AT5G46880 57.092 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa11g2081 START 1.4e-40 CL0209