Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2078 ATGGATAAAAGCGAAACGCTTTTCTTTGAAAAACTCCAAGTCGGCGAAGTTGTAGTCATCCAGGCGGTGGAAAGAAGAATTTCTTTATCAAAGGAAGCTAGAAATGGGCTAGAATTTTTGAAGCGTAAAAGGCTTCAACGAGCAAAACTCATTACTGCCACTGAGACTAGTGTTGCTAACACGATGGCTAGAAGTGGAGGAGATGCTTTAAGAGCTTCAGCATCATGTGGTATCAGATTGCATGGTAATGCAGATGTGTTCTCCAAGCGTAAGGTGGAGAAGTTTGACACAAGTGACCTTGAATGGACTGATAAAATTCTAGAGTGTCCTACGTATTACCCAACAAAGGAGGAATTTGAGGATCCTTTGATTTACTTGCAAAAGATAGCTCCAGAAGCTACAAAATATGGTATATGCAAGATTGTCTCACCTTTGAGTGCTTCTGTTCCTGCTGGGGTTGTTTTAATGAAGGAGAAAGCAGGATTCAAGTTTACAACTAGAGTACAGCCACTTCGGCTTGCTGAGTGGGACACTGAAGACAAGGTCACATTTTTCATGAGTGGAAGAAATTATACATTCCGCGATTTTGAGAAAATGGCAAACAACGTTTTTGCACATAGATATTCTAGTGCCGGATGTCTTCCTGCCCCATTTTTGGAAAAAGAGTTTTGGCATGAAATTGCTTGTGGAAAGATGGAAACTGTTGAATATGCATGTGATGTTGATGGTAGTGCATTTTCATCTTCTCCCACTGATCAACTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCAAGGTTGCCCAAGTCTATTTTGCGCCTCTTGGAAACAGCAATTCCGGGAGTAACTGAACCCATGCTATACATTGGAATGCTTTTCAGTATGTTTGCTTGGCATGTGGAGGATCATTATTTGTACAGTATAAATTATCATCACTGTGGGGCATCAAAAACTTGGTACGGCATTCCAGGTCATGCAGCGCCAGATTTTGAAAGGGTTGTGAAAGAGCACGTGTACACTAATGATATTCTTTCAAGTGAAGGAGAAGATGGAGCCTTTGACATTCTTGTGGGGAAAACAACTCTGTTTCCACCAAATATTTTGTTGGAACATGAAGTTCCGGTCTACAAGGCTGTCCAAAACCCGGGCGAGTTTGTAGTAACATTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAACTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCTAGCCGGCGATATGCACTCCTTAACAAGATGCCTCTTCTGCCTCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTTCATACAAACTTAGAACTTGAAGATTCAGACCTTTCCTCTGCAGACCTGCTAGCCCATAATCGCATAAAGATTTCTTTTGTGAATCTAATGCGCTTTCAGCATTGTGCTCGTTGGTTACTAATGAAATCACGGGCCTGTACTAGTGCTTTTTTGCATTCCCTTGGCACAATTCTCTGTAGCATCTGCAAACGCGATTGTTATGTTGCTTTTGTTGACTGTGAGTGTCACATGCACCCAGTGTGCCTTCGCCACGATATTGACTCTCTTGGCTTCACCTGTGGGAGCAAACACACTCTTTATTTGAGGGAGGATATTACTGATATGGAAGCTGCAGCCAAGAGGTTTGAGCAGGACGATGGAATTGTTGATGAGATTCTTAAGCAAACCAAGGGTGACAATAATATGTATTCGTATCCTTTGTCACACATGTTCCAGAGAGCTGAAGCAAGCGGATATACATCTTATTGTGAGCTAGAATTTGATTCTATTATTGAACATTATTCAACCCCAGATCAGGCCACAATTAATGAAGGGCACAATTTACAAAGTCAACATGTTTTGAGACGCAGCCCGGATCTTAAACCTGAAGTTTGTGAGGTTTCTTTTTCTTCTGCTGCATCCACTCTGTGTTCTCTTTCAGAACTTGTTGAGAGCTCTTGTGCTCCCAAAAATGATGACGGGCATGCATACTTTACATCAGGCTTTATTGATTCTGAAGAATGTTGTGAAAGATTATCTAATAGTGCATGTGAATCTTCACTATCCTCAGCACGCCATCATGAAACCACAAGTAAACCTCGGGGCGATCTTCACGGATTAGAGATGAAGCCCATCGTAGATAATGAGAGTGATGATTCTGATTCAGAGATTTTTAGGGTAAAGCGGCCTTCTTCTCTGAAGGCAGAGAAGAGAAATTTGAATGCTACCACGTTTATGAAGCATTCTGACCAACAGGGACCCAAACGCTTGAAGAAAGTTCCTCATGGAGGAAGTAGAGGGCAACCAATGGATTGCAGCGGAAGCAATGATTCAAGTAACAAATTTAGTCACCCTATTAAACGTAAATTTGATGGTGAAAGTTCTTCGAAGTACAAATTTCCGCGGGGAAATAGCATTCCCATTTCTATTAGGTATAAGAAGTTTGGCAATGAGGAAGTCAGTAGACAGCGAGATCACCACAGGAAAGATAGGTTGCAGCAGGTTATTAGAGAACGAGCTCCCATAGAGATTGGGCCAAAACGCCTTAAAGTCCGAGGCCCTTCATTTCTGAGCTTAGAGAGCAGATTAAATTGA 2634 0.4172 MDKSETLFFEKLQVGEVVVIQAVERRISLSKEARNGLEFLKRKRLQRAKLITATETSVANTMARSGGDALRASASCGIRLHGNADVFSKRKVEKFDTSDLEWTDKILECPTYYPTKEEFEDPLIYLQKIAPEATKYGICKIVSPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKMANNVFAHRYSSAGCLPAPFLEKEFWHEIACGKMETVEYACDVDGSAFSSSPTDQLGNSKWNLKKLSRLPKSILRLLETAIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAAPDFERVVKEHVYTNDILSSEGEDGAFDILVGKTTLFPPNILLEHEVPVYKAVQNPGEFVVTFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASRRYALLNKMPLLPHEELLCKEAMLLHTNLELEDSDLSSADLLAHNRIKISFVNLMRFQHCARWLLMKSRACTSAFLHSLGTILCSICKRDCYVAFVDCECHMHPVCLRHDIDSLGFTCGSKHTLYLREDITDMEAAAKRFEQDDGIVDEILKQTKGDNNMYSYPLSHMFQRAEASGYTSYCELEFDSIIEHYSTPDQATINEGHNLQSQHVLRRSPDLKPEVCEVSFSSAASTLCSLSELVESSCAPKNDDGHAYFTSGFIDSEECCERLSNSACESSLSSARHHETTSKPRGDLHGLEMKPIVDNESDDSDSEIFRVKRPSSLKAEKRNLNATTFMKHSDQQGPKRLKKVPHGGSRGQPMDCSGSNDSSNKFSHPIKRKFDGESSSKYKFPRGNSIPISIRYKKFGNEEVSRQRDHHRKDRLQQVIRERAPIEIGPKRLKVRGPSFLSLESRLN 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2078 877 Pfam jmjN domain 110 142 IPR003349 -
Bisa11g2078 877 PANTHER LYSINE-SPECIFIC DEMETHYLASE 102 799 - -
Bisa11g2078 877 SMART cupin_9 253 426 IPR003347 -
Bisa11g2078 877 FunFam Lysine-specific demethylase isoform A 104 453 - -
Bisa11g2078 877 Pfam C5HC2 zinc finger 506 557 IPR004198 -
Bisa11g2078 877 ProSiteProfiles JmjC domain profile. 256 426 IPR003347 -
Bisa11g2078 877 SMART JmjN_1 108 149 IPR003349 -
Bisa11g2078 877 ProSiteProfiles JmjN domain profile. 109 150 IPR003349 -
Bisa11g2078 877 SUPERFAMILY Clavaminate synthase-like 187 442 - -
Bisa11g2078 877 MobiDBLite consensus disorder prediction 700 737 - -
Bisa11g2078 877 Pfam JmjC domain, hydroxylase 286 409 IPR003347 -
Bisa11g2078 877 MobiDBLite consensus disorder prediction 795 809 - -
Bisa11g2078 877 MobiDBLite consensus disorder prediction 705 737 - -
Bisa11g2078 877 MobiDBLite consensus disorder prediction 754 811 - -
Bisa11g2078 877 Gene3D Cupin 109 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2078 Bisa-ChrBisa11 43862661 43868881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2078 106 563 JUMONJI Transcription Factor Family AT2G34880 32.959 2.61e-63 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bisa11g2078 JmjC 9.4e-39 CL0029