Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g2004 ATGGCGTCGATGCCAGGGTTTCGATTCCATCCGACGGATGAGGAACTGGTCATGTATATTCTGAAGAGGAAGATGTCCAGAAAGAAGCTGAAGCTCGACGTAATTCACGAGACCGATGTCTACAAGTGGGACCCTGAGGAATTGCCTGGGCAATCAGTGCTGAAAACTGGAGATAGACAATGGTTCTTTTCAGCCCTAGAGATAGGAAGTATACTAATAGTGGAAGAACTAATCGAGCAACATGACATGAATATTGAAAAAAAAATGATGGATGAGCATGTTCCTGACCAGCCAACACCTTATCCTGCCCTACCTCAGCACCTTCCTGTTGAAGTGATCGGTAATATACTATCCCACGTGCGGTCTGCTCGGGATGTTGTGATTGCATCAGCAACTTGTAGGAAATGGAGAGAAGCTTGGCGCAATCACCTGCACACTCTTTCATTCAATTCCAGTGACTGGCCTATCTACCATGAACTAACCTCCTTCATTGCTTGGCTTATGTATGCTAGGGACTCTTTGCGCCAGTTAGTATATTATATGAAGACGAGTTCAAATTTCAATATCATTGAAAAATGTGGCAGGCAAAAACTAGAAGTGTTGGCATTGGCTAACAATTCCATTACAGAACTCTCTTCTCTCCATAAATACATCAACTCCAATGCTTTCTTCATCTGCCATTCATCTTCTCCTCTGACACCTAATGGCCATCTTCACCAAATCACAATCTCTTACCATGCTTCATCCCTTTTACTTATCCTTCATCTTTTTACTTTCTGCCGAATGAAAACCACTGCTGCTAAGTTCACAATTGATCTCATCCATCGACACTCTCCTTTACGTCCTTTCTATAATCCATCTATCACCCACTTTGATCGCCTGCATGATGCATTCAAACGCTCAGTGATGCGTATGAACCATTTCAAGTCAGATATCCAAACCCCATTAGTACCTAATGATGGAGATTACCTTGTAAACTTATCAATAGGAATCCCACCTGTTCAGATACTTGGAGTAGCTAGTACTGGTAGTGATCTTATATGGACACAATGTAAGCCATGCAACAAATGTTACAACCAAACACTTCCTATCTTTAATGCTCATCGTTCCACCACATACCAGAACCTGTCATGTGATCCAAATCCTACCAGTGAGTATACCTATCGTTATGGAGACGGTTCTTACACTAAAGGAGTCCTTGCTGCTGAGACAATAACCTTAGGCATCAACCAGCCAGTTTCCCTACCAAATGTTGTGTTTGGGTGTGGACATGACAACGATGGTACTTTTCATAGACTGGTGTCTGGTGTCATAGGTCTGGGAGGTGGTCAACTTTCGTTAGTTTCTCAGATGGCTCAATCTGTTCATAGAAAATTCTCCTACTGTTTACTACCCTCATCGTAA 1404 0.4252 MASMPGFRFHPTDEELVMYILKRKMSRKKLKLDVIHETDVYKWDPEELPGQSVLKTGDRQWFFSALEIGSILIVEELIEQHDMNIEKKMMDEHVPDQPTPYPALPQHLPVEVIGNILSHVRSARDVVIASATCRKWREAWRNHLHTLSFNSSDWPIYHELTSFIAWLMYARDSLRQLVYYMKTSSNFNIIEKCGRQKLEVLALANNSITELSSLHKYINSNAFFICHSSSPLTPNGHLHQITISYHASSLLLILHLFTFCRMKTTAAKFTIDLIHRHSPLRPFYNPSITHFDRLHDAFKRSVMRMNHFKSDIQTPLVPNDGDYLVNLSIGIPPVQILGVASTGSDLIWTQCKPCNKCYNQTLPIFNAHRSTTYQNLSCDPNPTSEYTYRYGDGSYTKGVLAAETITLGINQPVSLPNVVFGCGHDNDGTFHRLVSGVIGLGGGQLSLVSQMAQSVHRKFSYCLLPSS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g2004 467 Pfam Xylanase inhibitor N-terminal 323 464 IPR032861 -
Bisa11g2004 467 ProSiteProfiles Peptidase family A1 domain profile. 323 467 IPR033121 -
Bisa11g2004 467 CDD F-box_SF 107 139 - -
Bisa11g2004 467 SUPERFAMILY F-box domain 104 167 IPR036047 GO:0005515
Bisa11g2004 467 Gene3D NAC domain 12 67 IPR036093 GO:0003677|GO:0006355
Bisa11g2004 467 SUPERFAMILY Acid proteases 316 465 IPR021109 -
Bisa11g2004 467 ProSiteProfiles Leucine-rich repeat profile. 197 218 IPR001611 GO:0005515
Bisa11g2004 467 ProSiteProfiles NAC domain profile. 3 162 IPR003441 GO:0003677|GO:0006355
Bisa11g2004 467 SMART fbox_2 108 149 IPR001810 GO:0005515
Bisa11g2004 467 Gene3D Acid Proteases 300 467 IPR021109 -
Bisa11g2004 467 PANTHER OS07G0603500 PROTEIN-RELATED 271 466 - -
Bisa11g2004 467 Pfam F-box-like 106 141 IPR001810 GO:0005515
Bisa11g2004 467 SUPERFAMILY NAC domain 4 64 IPR036093 GO:0003677|GO:0006355
Bisa11g2004 467 Pfam No apical meristem (NAM) protein 5 64 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g2004 Bisa-ChrBisa11 42860340 42868633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g2004 3 63 NAC Transcription Factor Family AT1G34190 77.049 1.81e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bisa11g2004 TAXi_N 1.9e-40 CL0129