Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1994 ATGGGATCTAGTTGGAGCAAGGCCAATTCTTCTTGCAATTCATCGGTGACATCGGCGTCTTCCGGCAGTTTTCGCAAAAATCGATCTAAGGGGCATAGAGGTTTTCAGTCGTATTGTTTAGGAACGACATCTGGATCTCATGACAGTGATAATGACGAACAGGTTTGTGATCAGAATAAAGAAAATCATGGTACCAATGGCAATGAAACAGACTCAGATGAGATGATGACCGAGTCTTTTAGGAAGGTTAAATCTGATGAAATCCATTGTATGCCTCCTAACATCCACCTTGATGAGTGGGGTCAAACAAATATTTCCAATACTGCATCCCGAACAGGTAGCAGTTCTGTCCGTGCAGGTTCAACCCAGTCCTTGAACCCTTCAAGTCGATTCCTTTCTCGGTTTAGCCTCATTCCTGGTAACGTAAGCTTCAGACTAAGTAGAACCACAAGTTTGGGTTCATCAAGGCATTGCCCTGTTTCTTCTGCAAATATCTCAATATTTAACAATGAAGACGACCTTAATCTGGATCCAGGATCTACTGGCAGTATGGTTAATCAAAATGATGCTCAACAATGCAGTGACTTGCACCATGCATCCTTTGTTAATCGAATATCTCCACATCGCTGTGAAGACACTACTATTAATTTGAGGTCTAACTCCCCGGCACCACTTTCCTATGGCAACTCACAAAACAATTCAACAAGTTCTTCTATGCAGGATGTGACTAGAGATGGAGATGGCACAAGAGAAGGGCTGAATTTAAACTTGTTTTCTCCAAGAATCCAAGCTGAAACAGAAAATGTTGAGATTAGACATAATGATCGGCGAAATGGAGCTCGAGAACCTGTTGAACGGAATGTTCGTTTTAGCCGTACTCTAAGTGTTGGAAGGCTTCGTGATAGAGTTCTTCGTCGATCAACATTATCAGACTTCACTTTTTGCCCTCTGCAACAAGAGAGGGATGCGAGAGATGTTAGTCAAGATAGTGGAAGACAAGCTGGGGGAAGAGATTCAGGAGTGTTGCCATCTGATAATAACTCTACAAGTGCTCCTTCCACATCTGGCTATCCTCCATCCAGTAATTCTAGTCCCTTGTTCAGCATTCAAGACTATGAGGTTGAGTCTTCACGATCAAGAGAAGCTAGGTATCATGATCTATTGGAACATCGATCCAATTTTCTAGAACGAAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAACGATTGGGTAGCCGATTTGAGAATCTGTCTGGGCATGACAGATTGTGTATCTTGTCTGGTCAGCATAGAAACGGCCGTTGTACATGCCGAACTAGTAGTCGTGATGCCAATTCAAATGACGATACTGGTGCTAGAGCTAGCATATCAAGAATTGTCATGCTTGCTGAAGCGTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCCCGCCCTTCTGTTTCTTCTATTGGATCTGTTCCTGCACCTTATGAAGTTGTGGAGTCCTTGCCTGTCAAATTATACACAAAATTGCATAAACATCAAGACGATGCTGCTCAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGAAAGCGTGCGAGTACTACCTTGTCATCATGAATTTCATAGAACATGCATAGACAAGTGGCTAAAGGAGATTCACAGGGTATGCCCGCTGTGCCGGAGGGACATCTGCATATCTTCTGATTCATTGCCAATAGAGAATTGA 1734 0.4296 MGSSWSKANSSCNSSVTSASSGSFRKNRSKGHRGFQSYCLGTTSGSHDSDNDEQVCDQNKENHGTNGNETDSDEMMTESFRKVKSDEIHCMPPNIHLDEWGQTNISNTASRTGSSSVRAGSTQSLNPSSRFLSRFSLIPGNVSFRLSRTTSLGSSRHCPVSSANISIFNNEDDLNLDPGSTGSMVNQNDAQQCSDLHHASFVNRISPHRCEDTTINLRSNSPAPLSYGNSQNNSTSSSMQDVTRDGDGTREGLNLNLFSPRIQAETENVEIRHNDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTLSDFTFCPLQQERDARDVSQDSGRQAGGRDSGVLPSDNNSTSAPSTSGYPPSSNSSPLFSIQDYEVESSRSREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRLCILSGQHRNGRCTCRTSSRDANSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPYEVVESLPVKLYTKLHKHQDDAAQCYICLVEYEDGESVRVLPCHHEFHRTCIDKWLKEIHRVCPLCRRDICISSDSLPIEN 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1994 577 SUPERFAMILY RING/U-box 499 569 - -
Bisa11g1994 577 SMART ring_2 521 562 IPR001841 -
Bisa11g1994 577 MobiDBLite consensus disorder prediction 217 243 - -
Bisa11g1994 577 MobiDBLite consensus disorder prediction 340 366 - -
Bisa11g1994 577 ProSiteProfiles Zinc finger RING-type profile. 521 563 IPR001841 -
Bisa11g1994 577 FunFam Putative RING zinc finger domain superfamily protein 490 568 - -
Bisa11g1994 577 MobiDBLite consensus disorder prediction 105 125 - -
Bisa11g1994 577 Pfam Ring finger domain 520 563 IPR001841 -
Bisa11g1994 577 MobiDBLite consensus disorder prediction 1 75 - -
Bisa11g1994 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 485 568 IPR013083 -
Bisa11g1994 577 MobiDBLite consensus disorder prediction 217 254 - -
Bisa11g1994 577 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 570 - -
Bisa11g1994 577 MobiDBLite consensus disorder prediction 1 25 - -
Bisa11g1994 577 MobiDBLite consensus disorder prediction 321 366 - -
Bisa11g1994 577 MobiDBLite consensus disorder prediction 50 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1994 Bisa-ChrBisa11 42785040 42789166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1994 239 567 C3H Transcription Factor Family AT5G45290 60.714 1.11e-114 350
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1994 11 42785040 42789166 Bisa11g1994 11 42785040 42789166 ECH