Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa11g1952 | ATGATGCATTGCTTTGTTGCCCTTGAGGTTGTGTTTTCTCATGCGGGCTTAAAATTGGAGATGAGTAATACTAAAGAAAACGAGCGAGCTGGTCAGAATGTGCCAGTGGGTGAGGAGGAAAGCAAGCAATTGGTTGATGCACAGGTTCAAGTCGAAGCTTCTTCTACTCCCGTTCCAGTAGAGAAAACTTCAAATCATGTTGAAAATGTGAAGGCAGAGGCACCTGCTGATGATAAAATTCTGGAACCACCTGCCATTCCGGAGGCCACTTCTCCACAAGAAGTTCAAAATTCTCTTCACTCTGTCCCAGTAGAGGCCAGTGCTCAAGGTTTGGTTCAAATTGATTCAGGACACGCTTCAGATGTGAAGAATGAGAACAAAGAATTTCCACGGACAGATACGGGCATTAAGAGTGATGCTGTTAGTGAAAAAAATGTTGATACTTCTGAAACAGTTGTTAACGTCAAGCCTGAAGCTTGTGAAGTGCCTGCTAATAAAACTTGCAACAATAGTGATTCCATACCCCCGAGTCGTAATGAACCTACAACACCGCAACCTGTTCCTGCAGATACAAAAGCCGAGACTGCAAATTCCGTAAAAGTTGAGACTAAGATTAATGAAGAGCAACCTGTCACGCCTGCAGATAATGGGAATTCAAACACAAAGCACTCTTTTTGGGATGCTGACTATGACGGGAACGAATCAGGAACAGAAGCAGAGCAGTCAGCTTTTATGAAGGAACTTGAACACTTCTTTAGGGAGAGAAGCATGGAATTTAAACCTCCTAAATTCTATGGAGAGGGGCTTAATTGTCTTAAGTTGTGGAGAGCGGTGACCAGATTGGGTGGCTATGATAAGGTAACCTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCCTTCAAACCTCCAAAGACATGCACAACGGTTTCATGGACATTTCGAGGCTTTTATGAAAAGGCTCTACTTGATTATGAAAGGCATAAAACAAAAGGCGGTGAACTTACTGTGCCTATTGCTTCTCATTCAGAGCCTATAAACATTGAAAATCAGGCTTCAGCGTCAGGTAGAGCACGGAGAGATGCTGCAGCACGGGCTATGCAGGGTTGGCACTCGCAACGTCTTCTTGGTAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGACTTCTATCCCTATGCAGAAGCGTGAAAAACAGCTCAAAAGCATCAATTTACTTAAACGTAAGAAACCATCTTACATGGATAATGCAGTCAAAGCAGCACGCAGTAAACCATCTAAGCCACAATTGGACACAGCGGTTGTTGACATTGGACCTCCTGCCGACTGGGTAAAAATCAATGTTCAAAAAACTAAAGATTGTTTTGAGGTCTATGCTCTAGTTCCTGGCCTTCTGCGGGAAGAGGTGCGGGTTCAATCAGACCCAGCAGGTCGCTTGGTCATCAGTGGTGAACCTGAGCATCCGGATAATCCTTGGGGTGTGACACCCTTTAAAAAGGTTGTAAGCTTGCCTTCAAGAATTGATCCTCATCAGACATCAGCTGTAGTAACTTTGCACGGACAGCTGTTTGTCCGTGTACCATTTGAGCAATCGGAGTAG | 1599 | 0.4422 | MMHCFVALEVVFSHAGLKLEMSNTKENERAGQNVPVGEEESKQLVDAQVQVEASSTPVPVEKTSNHVENVKAEAPADDKILEPPAIPEATSPQEVQNSLHSVPVEASAQGLVQIDSGHASDVKNENKEFPRTDTGIKSDAVSEKNVDTSETVVNVKPEACEVPANKTCNNSDSIPPSRNEPTTPQPVPADTKAETANSVKVETKINEEQPVTPADNGNSNTKHSFWDADYDGNESGTEAEQSAFMKELEHFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTKGGELTVPIASHSEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRTSIPMQKREKQLKSINLLKRKKPSYMDNAVKAARSKPSKPQLDTAVVDIGPPADWVKINVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa11g1952 | 532 | MobiDBLite | consensus disorder prediction | 164 | 196 | - | - | |
| Bisa11g1952 | 532 | FunFam | AT-rich interactive domain-containing protein 3 | 424 | 532 | - | - | |
| Bisa11g1952 | 532 | MobiDBLite | consensus disorder prediction | 120 | 143 | - | - | |
| Bisa11g1952 | 532 | Pfam | ARID/BRIGHT DNA binding domain | 241 | 325 | IPR001606 | GO:0003677 | |
| Bisa11g1952 | 532 | CDD | ACD_sHsps-like | 447 | 527 | - | - | |
| Bisa11g1952 | 532 | MobiDBLite | consensus disorder prediction | 117 | 143 | - | - | |
| Bisa11g1952 | 532 | Gene3D | - | 238 | 336 | IPR036431 | GO:0003677 | |
| Bisa11g1952 | 532 | MobiDBLite | consensus disorder prediction | 163 | 196 | - | - | |
| Bisa11g1952 | 532 | Gene3D | - | 429 | 532 | IPR008978 | - | |
| Bisa11g1952 | 532 | FunFam | AT-rich interactive domain-containing protein 3 | 238 | 337 | - | - | |
| Bisa11g1952 | 532 | SMART | ARID_2 | 235 | 325 | - | - | |
| Bisa11g1952 | 532 | Pfam | Hsp20/alpha crystallin family | 449 | 531 | IPR002068 | - | |
| Bisa11g1952 | 532 | ProSiteProfiles | ARID domain profile. | 238 | 329 | IPR001606 | GO:0003677 | |
| Bisa11g1952 | 532 | ProSiteProfiles | Small heat shock protein (sHSP) domain profile. | 432 | 532 | IPR002068 | - | |
| Bisa11g1952 | 532 | SUPERFAMILY | ARID-like | 231 | 342 | IPR036431 | GO:0003677 | |
| Bisa11g1952 | 532 | CDD | ARID | 240 | 325 | - | - | |
| Bisa11g1952 | 532 | SMART | bright_3 | 239 | 330 | IPR001606 | GO:0003677 | |
| Bisa11g1952 | 532 | PANTHER | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT | 81 | 531 | IPR045147 | GO:0006357 | |
| Bisa11g1952 | 532 | SUPERFAMILY | HSP20-like chaperones | 441 | 528 | IPR008978 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa11g1952 | Bisa-ChrBisa11 | 41956361 | 41974907 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa11g1952 | 233 | 530 | ARID Transcription Factor Family | AT1G76510 | 64.356 | 1.33e-130 | 385 |
Transcription factors information