Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1929 ATGACTCGGACTCTGAGAATTCTTAATTCCGTGGACCACGGCACAGCTGCAGCGGCTCCGCCACCGGAGGCCGTTGCCATGGAATCGGACTTCGTGGTGATTCTCGCGGCTTTGCTCTGCGCTTTGATATGCGTGGTCGGCCTGATAGCCGTCGCGCGGTGCGCCTGGCTCCGGCGAGGCTCCGGCGCCGGGGGATCTCCCACGCAGGCTCTGGCGAACAAAGGTCTCAAGAAGAAGGTACTCCAATCGCTGCCGAAATTCAACTACGTCGACGAGAATCCGATCAAGTGGATGGCTACGTCGGAGTGCGCGATTTGCTTGGCGGAGTTCGCCGCCGGCGACGAGATCCGCGTTCTGCCTCAGTGCGGGCACGGTTTCCACGTCGCCTGCATCGACACGTGGCTTGGGTCTCACTCTTCGTGCCCTTCCTGTCGGCAGATTCTGGCGGTGGCGAGGTGCCAGAAGTGCGGCCAGTACCCGTCGGTTGGCGGCGGCGGATCTGCCGGAGCCACCAGTGGTTCTGTGAGTGAACCGGAGTTGAAGTCCAGAGAAGACGACAATGCTGCAGCCGTCGCCGCCGCCGCCGCGAATAATTGTAACACCAGCGGCGGTGTTAGCGCTGATACAGATCGTCACGACCACCACAGAGCCAATAATAATTTCTTGCCTTAA 672 0.6071 MTRTLRILNSVDHGTAAAAPPPEAVAMESDFVVILAALLCALICVVGLIAVARCAWLRRGSGAGGSPTQALANKGLKKKVLQSLPKFNYVDENPIKWMATSECAICLAEFAAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILAVARCQKCGQYPSVGGGGSAGATSGSVSEPELKSREDDNAAAVAAAAANNCNTSGGVSADTDRHDHHRANNNFLP 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1929 223 CDD RING-H2_EL5-like 102 145 - -
Bisa11g1929 223 MobiDBLite consensus disorder prediction 163 223 - -
Bisa11g1929 223 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 23 157 - -
Bisa11g1929 223 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Bisa11g1929 223 FunFam E3 ubiquitin-protein ligase ATL6 66 151 - -
Bisa11g1929 223 MobiDBLite consensus disorder prediction 207 223 - -
Bisa11g1929 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 150 IPR013083 -
Bisa11g1929 223 Pfam Ring finger domain 102 145 IPR001841 -
Bisa11g1929 223 SUPERFAMILY RING/U-box 82 150 - -
Bisa11g1929 223 SMART ring_2 103 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1929 Bisa-ChrBisa11 41636306 41636977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1929 1 156 C3H Transcription Factor Family AT1G20823 65.269 8.98e-65 197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1929 11 41636306 41636977 Bisa01g2993 01 64373700 64374326 CCT
Bisa11g1929 11 41636306 41636977 Bisa11g1929 11 41636306 41636977 ECH