Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1923 ATGATACAAGTTTGGCTTGTGGTTTTTATGGTTTTCTGCAAAGGGTTCTATTCAACTGGAGCTGGCCTGAATCATTCTACAAGACCTGATTCTGTAAATATTGGGCTTCTTTACTCTTTCAACAGCACCATCGGTAAGATTATAAAAATTGCCGTAGAAGCTGCAGTCGAAGATGTAAATTCTGATCCATCTATTCTTGGTAAAACTAAGCTCAAAGTCTCAATGCAAGAGGATTCAAAATACAGAGGCTTTTTGAGCATTGCTGAAGCCTTGAATCTCATGGCGACACACTGTGTGGCTATTATTGGCCCTCAAACCTCTATAACAGCTCATGTCATATCTCATATTGCAAACGAGTTCAAAGTTCCTCTGGTATCATTTTCTGCTACGGACCCCACACTCTCTTCCCTTCAATTCCCGTTCTTCGTTAGAACATCTCATAGTGATCTTTATCAGATGACTGCAATAGCAGAACTTGTGAATTACTATGGGTGGAGACAGGTGATTGCAGTGTATGTTGATGATGACCATGGGAGAAATGGGATTAGTGCATTAGGGGACAAGCTTTCCGAGAGACGCTGTAAGATCTCCTATAAAGCCCCTCTGAGCCCTGGAGCAACTAGGGAGGAGATTACTGATGTTCTTGTACAGGTGGCTTTAGCAGAATCTAGAATCATAGTTGTACATACTATTGCTGCTTGGGGTCAAAAGGTGTTTTCTGTGGCAAAGTATCTGGGGATGATGGGATCTGGGTATGTTTGGATAGCCACTAATTTTATCTCTACTCTTATGGACACAGATGGTCCACTACCTCAAGATACAATGGATATGATTCAAGGAGTTCTGACACTGAGAATCTACACACCAGACTCAGAGGTCAAGAGAAGATTTGTTTCAAGGTGGAAAAACTTAACCAGTGGGAAGAATGCTAATGGTGATACTGATCACCTTGGATTGAGTACTTTTGGTCTCTATGCATATGATACTGTGCACGTGCTAGCTCGTGCACTTGATAGTTTTTTCAAAAAAGGGAACCAAATTACATTCTCATATGATTCCAAGTTGTCTGAATTACAAGGGGACAATTTAAATCTTGATTCTTTGAATATCTTTGATCAAGGAAAACTGTTGAAAAAAAGTATCTATGAGGTTAATATGACTGGTGTAACAGGTACAATCAAGTATTTATCTGATGGAAACCTTGTCAATCCAGCATATGAAATCATTAATGTGATTGGGACGGGATCTAGGAGGATTGGTTATTGGACTAATTACACTGGACTATCAATAGTTACTCCTGAAGAACTTTATTCAAAGCCACCCAATCGTTCCAGTGCAAATCAAAAGCTAGGTCCTGTGATTTGGCCTGGGGAACCAGCCACGAGGCCTCGTGGTTGGGTATTTCCAAACAATGGGAGGCTCTTAAAGATTGGGGTACCGAGAAGATTTAGCTACCGTGAATTTGTCTCACAAATACCAGGCACTGACATGTTCAAGGGATTCTGCATTGATGTATTTCTTTCTGCAGTGAACTTGCTGCCTTATGCTGTCCCTTATAAGTTTATTCCATTTGGGGATGGTCACAGCAATCCTGATAACTCCGAGCTTGTTCGTTTGATCACAGCAGGTGTCTTTGATGGAGCAGTAGGTGATATCACAATTACTACAGAAAGAACTAAGATGGTGGATTTTACTCAGCCATTCATCGGGTCTGGTCTAGTTGTGGTAGCACCTATTAGGAAGTTGGAATCTGGTGCTTGGTCCTTTTTGAGGCCATTTACTCCAATGATGTGGGGTGTCACAGCTATCTTTTTCCTAGCAGTTGGAGTTGTTGTTTGGATTTTGGAGCATAGGTTGAATGATGATTTCCGGGGACCTCCTAGAAAACAACTAGTTACAGTTTTATGGTTCAGTCTTTCAACTATGTTTTTTGCCCACAGGGAAAACACAGTGAGCACTCTTGGTCGCTTTGTGCTAATTATATGGTTATTTGTAGTTCTTATAATAAACTCAAGTTACACAGCAAGCCTGACCTCAATCCTAACAGTGCAACATCTTTCCTCTTCCATTAAAGGCATTGAAACTTTGGTCAATAGCAAAGACCCTATTGGCTACCTGCAGGGTTCTTTTTCTAGAAATTATCTGATCCAAGAAGTTGGTATTGCTGAATCAAGACTTGTTCCTCTAAAGACACCAGAAGAATCAGCAAAAGCATTAAGAGATGGTCCTAAAAGGGGTGGTGTTGCTGCATATGTTGATGAGCGTGCTTACACTGAGCTCTTCCTTTCGAGCCGGTGTGATTTCAGTATGGTTGGTCAAGAGTTCTCTCGAGATGGCTGGGGATTTGCTTTTCCTCGGGACTCGCCTTTGGCGGTTGACCTGTCAACTGCCATATTGGAATTGGCAGATAATGGAGACTTACAGAGAATCCATGACAAATGGCTTCTGAACATTGCTTGCCTAACGCAGAACACAAAGTTTGAAGTGGACAGACTTGATCTTAAAAGCTTTGGGGGGCTCTATCTTATTTGTGGATTGGCTTGCTTGATTGCTCTACTGGTCTATCTGATTCTGATTGTGAAGCAGTACAAGAAGCACTACGTAGGGGAGGTTGAGTCTACTGTTGGCCGGAGCTCAGGATCTTCTTCACATATTCGGACGTTCCTTTCTTTTGTAGACGAAAAAGAATCGGAGGTTAAGAATCGATCCAAGAGAAGGCAATTGGAGACCTCTTACAGAAGCACTGATGGAAGTGGATCAGCGATCAACTCTAATAAAGAATATGCTCAATCATGTTCAAACATAAGTGTTGATTGTATCTCTGAAACCTGA 2832 0.4156 MIQVWLVVFMVFCKGFYSTGAGLNHSTRPDSVNIGLLYSFNSTIGKIIKIAVEAAVEDVNSDPSILGKTKLKVSMQEDSKYRGFLSIAEALNLMATHCVAIIGPQTSITAHVISHIANEFKVPLVSFSATDPTLSSLQFPFFVRTSHSDLYQMTAIAELVNYYGWRQVIAVYVDDDHGRNGISALGDKLSERRCKISYKAPLSPGATREEITDVLVQVALAESRIIVVHTIAAWGQKVFSVAKYLGMMGSGYVWIATNFISTLMDTDGPLPQDTMDMIQGVLTLRIYTPDSEVKRRFVSRWKNLTSGKNANGDTDHLGLSTFGLYAYDTVHVLARALDSFFKKGNQITFSYDSKLSELQGDNLNLDSLNIFDQGKLLKKSIYEVNMTGVTGTIKYLSDGNLVNPAYEIINVIGTGSRRIGYWTNYTGLSIVTPEELYSKPPNRSSANQKLGPVIWPGEPATRPRGWVFPNNGRLLKIGVPRRFSYREFVSQIPGTDMFKGFCIDVFLSAVNLLPYAVPYKFIPFGDGHSNPDNSELVRLITAGVFDGAVGDITITTERTKMVDFTQPFIGSGLVVVAPIRKLESGAWSFLRPFTPMMWGVTAIFFLAVGVVVWILEHRLNDDFRGPPRKQLVTVLWFSLSTMFFAHRENTVSTLGRFVLIIWLFVVLIINSSYTASLTSILTVQHLSSSIKGIETLVNSKDPIGYLQGSFSRNYLIQEVGIAESRLVPLKTPEESAKALRDGPKRGGVAAYVDERAYTELFLSSRCDFSMVGQEFSRDGWGFAFPRDSPLAVDLSTAILELADNGDLQRIHDKWLLNIACLTQNTKFEVDRLDLKSFGGLYLICGLACLIALLVYLILIVKQYKKHYVGEVESTVGRSSGSSSHIRTFLSFVDEKESEVKNRSKRRQLETSYRSTDGSGSAINSNKEYAQSCSNISVDCISET 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1923 943 SMART GluR_14 476 817 IPR001320 GO:0015276|GO:0016020
Bisa11g1923 943 CDD GluR_Plant 475 815 - -
Bisa11g1923 943 CDD PBP1_GABAb_receptor_plant 33 431 IPR044440 -
Bisa11g1923 943 PIRSF IGluLR_plant 1 939 IPR017103 -
Bisa11g1923 943 SUPERFAMILY Periplasmic binding protein-like I 27 467 IPR028082 -
Bisa11g1923 943 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 237 260 - -
Bisa11g1923 943 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 106 134 - -
Bisa11g1923 943 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Bisa11g1923 943 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 326 338 - -
Bisa11g1923 943 Pfam Bacterial extracellular solute-binding proteins, family 3 532 815 IPR001638 -
Bisa11g1923 943 Gene3D - 586 709 - -
Bisa11g1923 943 FunFam Glutamate receptor 712 819 - -
Bisa11g1923 943 FunFam Glutamate receptor 470 586 - -
Bisa11g1923 943 Pfam Receptor family ligand binding region 50 413 IPR001828 -
Bisa11g1923 943 Gene3D - 710 817 - -
Bisa11g1923 943 Gene3D - 148 428 - -
Bisa11g1923 943 Gene3D - 470 585 - -
Bisa11g1923 943 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 895 IPR015683 -
Bisa11g1923 943 Pfam Ligand-gated ion channel 816 848 IPR001320 GO:0015276|GO:0016020
Bisa11g1923 943 MobiDBLite consensus disorder prediction 900 924 - -
Bisa11g1923 943 Gene3D - 50 403 - -
Bisa11g1923 943 FunFam Glutamate receptor 586 716 - -
Bisa11g1923 943 SUPERFAMILY Periplasmic binding protein-like II 452 816 - -
Bisa11g1923 943 FunFam Glutamate receptor 148 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1923 Bisa-ChrBisa11 41568749 41573293 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1923 5 909 Ion Channels AT3G51480 60.375 0.0 1157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1923 11 41568749 41573293 Bisa11g1923 11 41568749 41573293 ECH