Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1918 ATGTCGTGCTCCTCGTCGTCAGGCTCGGAGGAAGATGATGAGGGCTTCGAATCCTATAGGAAAGGAGGCTACCACGCCGTCAGGGTCGGCGATCAGTTCGCCGGCGGCAGGTACATAGCACAGAGGAAGCTCGGTTGGGGTCAGTTCTCGACTGTGTGGCTTGCTTACGATACTCGCAACTCTACATATGTTGCTCTTAAAATCCAGAAAAGCGCATCTCAGTTTGCTCAGGCTGCCCTTCACGAGATCAGAGTTCTTTCCTCCATTGCAGATGGCGACCCTTCAAATTCAAAGTGTGTTGTCCACTTGATTGACCACTTCAAGCACACAGGTCCAAATGGGCAGCACCTTTGTATGGTCCTTGAGTTTCTTGGGGATAGTTTGCTTCGTCTGATCAGATATAACCGTTATAAAGGCCTTCCATTAAATAAAGTTAGGGAGATTTGCAAATGCATTTTGACTGGTCTGGATTACTTGCATAGAGAACTTGGTATAATCCACAGTGATCTAAAACCCGAAAATATTCTTCTCTCTTCATCAATTGATGCTTCCAAAGATCCCTTTAAATCTGGAGTTTCCCCAATCCTAGAGAGACCTGAGGGAAACCCAACTAGTGGAGTTTCTAGTCTTATCGAGAAAAGGTTGAGAAGGAGGGCAAGGAGGGCAGTTGCTAAGATATCTGAAAGACGTGGTTCAATGGGAGGAACAGGAGAAGCTCGGAAATCTGAAAGAAATGTTGAAGGGATTGATGTGAGATGCAAGATTGTAGATTTTGGAAATGCATGTTGGGCTCAACAGCCAATTGCAGAAGAAATTCAGACAAGGCAGTATAGAGCTCCTGAGGTAATATTGCAGGCTGGGTATTCCTTCTCTGTTGACATGTGGTCTTTTGCTTGCACTGCCTTTGAGCTTGCCACTGGTGATATGATGTTTACCCCTAAAGTTGGACAAGGCTTCAGTGAGGATGAGGATCACCTTGCCATGATGATGGAACTCCTTGGAAAAATGCCCCGAAAGGTCGCTATCTCCGGAGCACGATCCAAGGATTACTTCGACAGACATGGGGATCTAAAACGGATTCGGAGGCTAAAATTCTTGTCATTGGAGAAGTTGTTGATTGATCGGTACAAATTTTCACAGAACGACGCGAAGGAGTTCTCAGACTTTATTGTTCCTATTCTTGATTTTGCGCCAGAGAGCCGGCCAACCGCGCAGCAGTGCTTACAACATCCATGGCTGAATGAGAAGGAGGAGTCAACTCCAAATGAATCTAGTGTGGCAAAGGTTAATGTTGGGATGAGCAACCTTAAAATCAAGATGGGAAAGTGA 1329 0.4575 MSCSSSSGSEEDDEGFESYRKGGYHAVRVGDQFAGGRYIAQRKLGWGQFSTVWLAYDTRNSTYVALKIQKSASQFAQAALHEIRVLSSIADGDPSNSKCVVHLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIRYNRYKGLPLNKVREICKCILTGLDYLHRELGIIHSDLKPENILLSSSIDASKDPFKSGVSPILERPEGNPTSGVSSLIEKRLRRRARRAVAKISERRGSMGGTGEARKSERNVEGIDVRCKIVDFGNACWAQQPIAEEIQTRQYRAPEVILQAGYSFSVDMWSFACTAFELATGDMMFTPKVGQGFSEDEDHLAMMMELLGKMPRKVAISGARSKDYFDRHGDLKRIRRLKFLSLEKLLIDRYKFSQNDAKEFSDFIVPILDFAPESRPTAQQCLQHPWLNEKEESTPNESSVAKVNVGMSNLKIKMGK 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1918 442 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Bisa11g1918 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Bisa11g1918 442 CDD STKc_SRPK 27 413 - -
Bisa11g1918 442 SUPERFAMILY Protein kinase-like (PK-like) 32 420 IPR011009 -
Bisa11g1918 442 FunFam Serine/threonine-protein kinase SRPK 117 413 - -
Bisa11g1918 442 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa11g1918 442 Pfam Protein kinase domain 39 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa11g1918 442 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Bisa11g1918 442 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 8 210 - -
Bisa11g1918 442 FunFam Protein kinase superfamily protein 24 123 - -
Bisa11g1918 442 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa11g1918 442 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Bisa11g1918 442 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1918 Bisa-ChrBisa11 41418044 41423785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1918 4 425 EF-hand Containing Proteins AT5G22840 50.840 2.33e-168 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Bisa11g1918 Pkinase 1.2e-22 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1918 11 41418044 41423785 Bisa01g2964 01 62836831 62840881 CCT
Bisa11g1918 11 41418044 41423785 Bisa11g1918 11 41418044 41423785 ECH