Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1909 ATGAAGGCAAATCTGAGAGCGTATAGCATCGGAGCACACGGATCGATGACGTGGACCCCTTCTTATTCCCCCACACACGCACCCTCACCAACAAAGAGCGTAGCATTGAGCGGGCTTATCCTTCTGCACTCTTTTATCTTCTTTCCTTCGAAAACCCTACGTTCAAGGATCACTATGCCTAAAACGAAAGCTGACGCCAGAGGCTCTGATAACCGTCTGAAGCGCAAGGGCGCTGGAGCGGGAAGGAAGCAGACAAAGAAAGCTGCTAAGGATCCAAACAAGCCGAAAAGGCCTCCCAGTGCTTTCTTTGTTTTTATGGCTGAGTTCAGGGAACAGTTTAAAAAGGAGCATCCAAACAACAAATCAGTTGCAGTTGTCGGTAAAGCTGGCGGTGAAAAGTGGAAATCGTTGTCTGATGCTGAAAAGGCTCCCTACGTGGCTAAGGCGGAGAAGAAGAAAGAAGAATATGATAAAACTATTCAGAACTACAATAAGAGATTGGCTGAGGGTAAAAACCCTTCAGAGGAAGAAGAGTCGGATAAGTCAAGATCTGAAGTGAACGATGATGATGAAGATGAGGATGAAGACGATGATGAGTAA 600 0.4617 MKANLRAYSIGAHGSMTWTPSYSPTHAPSPTKSVALSGLILLHSFIFFPSKTLRSRITMPKTKADARGSDNRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMAEFREQFKKEHPNNKSVAVVGKAGGEKWKSLSDAEKAPYVAKAEKKKEEYDKTIQNYNKRLAEGKNPSEEEESDKSRSEVNDDDEDEDEDDDE 199
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1909 199 SMART hmgende2 94 165 IPR009071 -
Bisa11g1909 199 CDD HMG-box_AtHMGB1-like 96 156 - -
Bisa11g1909 199 MobiDBLite consensus disorder prediction 182 199 - -
Bisa11g1909 199 MobiDBLite consensus disorder prediction 58 77 - -
Bisa11g1909 199 MobiDBLite consensus disorder prediction 58 99 - -
Bisa11g1909 199 Pfam HMG (high mobility group) box 95 164 IPR009071 -
Bisa11g1909 199 MobiDBLite consensus disorder prediction 134 181 - -
Bisa11g1909 199 SUPERFAMILY HMG-box 82 166 IPR036910 -
Bisa11g1909 199 Gene3D High mobility group box domain 79 181 IPR036910 -
Bisa11g1909 199 MobiDBLite consensus disorder prediction 130 199 - -
Bisa11g1909 199 Coils Coil 146 166 - -
Bisa11g1909 199 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 95 164 IPR009071 -
Bisa11g1909 199 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 62 197 IPR031061 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bisa11g1909 Bisa-ChrBisa11 41328231 41329865 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Bisa11g1909 HMG_box 9.8e-24 CL0114