Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1905 ATGCAAAGAAGGAAAGGAGCCGAAAAGGAAAATAATAAAAATAGTGCCATATTTACCTTGGCAGACCCTGAACTGAGGCGAAAACAACCAAAAAGAACAGTGCAAGATCATGCAAGCACAACTCGAAAAGCTGGTTTTTGCCTCATTCTTTTCGCTTTATTAGTCCACTGTCATTCACTCTGCTTCGTGCCCAATAGTCATGGTATCTTCACCGCCTTCATGGATTTTGCGCGGACAAGTTTGCTGACCACTCTTCTTGTCTTCCAGAACACCATTAAAGAAGAGTTGATAAGGAGCGTGCATGTCTACCGATTAAAGGATGAGAGGGAAAGCGAAGTTGAAAGAGAGTTTGTGTTTTCTCGGTGCGGCCCATACGGGGAAATGCGGGCTACCCCAATTCTTAGATTACAGAAATTTCGTGTTTCCGAAGTTTCTGAAGGGTATCAGGATGGAGTGTGGCTCTGTATCTTTGCGTTTCACGCCGATCACAAGCCTCAATTTTACCGCATTCCTTCAATATTGTCAATCAAAAGTAATCCCAAGCTTCAGATGATCCCAACATTGGTTAGTGATCTCCACATGATATTTGAGTCAGACTGCAAATCAAAAGAAAATGATATTCCGCAAATTTCTCCGGATGAAACATGCCAAGGAGATGGCAATGATAGCCATCGACCAAGACAAATTTTGTTACAAGATCTCAATTGTCTTCCTTATCCAGATGACATGCCCGTGTTACAAGACAATGAGCCATATGATGAAAGTTTAAACATGTCTGAGTCACCAGAGAACGAGCCAGACGATGAAAGTACAGACATGGCTGAGTTACCAAACGATGATCTTGTTGATGAAAGTTTACCAGGTAGCATAGAGAAGAAAAAGAGGGCAGCCAGTAAAGATGTAGCAAGCATTGGTTTAGCAGATCTGGTGAAGTACTTTGATGTGCCAATTGTAGAGGCATCAAAAAATCTAAAAGTTGGACTTACTGTACTCAAGAGGAAATGCAGAGAGTTTGGTATTCCCCGCTGGCCTCATAGAAAGATTAAATCACTTGACAATCTCATTCATGATCTTCAGGAAGTGGCAGAAAATGAAGAAATAGAGAACAACGATGCAGTCATGGCAGTGACAAAGAGGCAACAGATGCTTGAGTGTGAAAAAGAAAATATTGAGAGGAAACCCTTCATGGACATACAAAGAGAAACCAAGAGATTCAGGCAGGATGTCTTCAAGAGAAGGCACAGAGCTAGAGCTATGACAAGACAGAGTTCTAGTGCCTCCAGTTCTTAG 1290 0.4194 MQRRKGAEKENNKNSAIFTLADPELRRKQPKRTVQDHASTTRKAGFCLILFALLVHCHSLCFVPNSHGIFTAFMDFARTSLLTTLLVFQNTIKEELIRSVHVYRLKDERESEVEREFVFSRCGPYGEMRATPILRLQKFRVSEVSEGYQDGVWLCIFAFHADHKPQFYRIPSILSIKSNPKLQMIPTLVSDLHMIFESDCKSKENDIPQISPDETCQGDGNDSHRPRQILLQDLNCLPYPDDMPVLQDNEPYDESLNMSESPENEPDDESTDMAELPNDDLVDESLPGSIEKKKRAASKDVASIGLADLVKYFDVPIVEASKNLKVGLTVLKRKCREFGIPRWPHRKIKSLDNLIHDLQEVAENEEIENNDAVMAVTKRQQMLECEKENIERKPFMDIQRETKRFRQDVFKRRHRARAMTRQSSSASSS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1905 429 Coils Coil 373 393 - -
Bisa11g1905 429 ProSiteProfiles RWP-RK domain profile. 286 371 IPR003035 -
Bisa11g1905 429 PANTHER PROTEIN RKD4 226 427 IPR044607 GO:0003700
Bisa11g1905 429 MobiDBLite consensus disorder prediction 260 279 - -
Bisa11g1905 429 Coils Coil 348 368 - -
Bisa11g1905 429 MobiDBLite consensus disorder prediction 203 224 - -
Bisa11g1905 429 MobiDBLite consensus disorder prediction 242 285 - -
Bisa11g1905 429 Pfam RWP-RK domain 304 351 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1905 Bisa-ChrBisa11 41243878 41248355 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1905 92 429 AtRKD Transcription Factor Family AT4G35590 44.828 5.17e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Bisa11g1905 RWP-RK 2.8e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1905 11 41243878 41248355 Bisa11g1905 11 41243878 41248355 ECH