Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1896 ATGGGAGGTGACAGTGCCCTTGATGATGCGACCGCCACCCAGTCCAAGGGCAGTGATGGAGTGAGTATCAACGTTCGATGCTCCAATGGTTCGAAATTCTCGGTTCAGATAAGCCTCGAATCAACTGTCGGATTGTTCAAGGAACTTGTCGCTCGGAATTGCGATATCCCAGCCGAACAACAGCGGTTGATTTACAAGGGTCGGATCTTGAAGGACGATCAAACTCTTCAAAGCTATGGTTTGGAGGCGGATCACACTGTCCATTTGGTTCGTGGCTTTGCCCCATCTTCAACTACCAATACAACTGGTGGGACCAATGCCACTGGTACAAATACCACAACCAATAATGCAAGAGGTGCTTCTAATGAAGGTGGCGGTTTAGGAGGACCTGGTATTGGAGATTCATCGTTTCCTGGACTAGGTATTAATGGGCTTGGAGGAAGTGGTGTCAATGGTTTGTTTGGAGCTGGCCTTGCGGATCTTGAACAAATGCAGCAACCATTTCTTTCTAATCCCAATATGATGAGAGAAATGATGAACACACCTGCTATACAGAATCTAATAAATAATCCTGAGATAATGCGGAGTCTTATAATGAGCAACCCTCAATTGCGAGAGCTCATGGATCGAAATCCTGAGCTAGCACACATACTTAATGATCCTGCCACCCTACGTCAGACACTTGAAGCTACAAGAAACCCTGAGATCATGCGTGAAATGATGAGAAATACTGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTTAACATGTTGAGGCGCATGTATGAAAATGTTCAAGAGCCATTCTTAGATGCCACAACAATGGCTGGTAATACAGGAACTGATAACTCTAACCCTTTTGCTGCACTCTTGGGAACTCAAGTTGGACAAGCCAGGGATCGATCAACTAATCCTTCAACTACTGGTGCTGAAGCAACGGCTGGTTCTCCCTCCCCTAATACAAATCCACTTCCTAACCCTTGGGGCTCTACTGGAACTGGAGGTGCCCAAAATAACTCTCCAAGGACAACAACTGGTGGGGATGCTAGGCAGCAGGCACCTGCTGCACCTGCTGGCTTAGGAGGACTTGGTCTGCAGGATTTTCAAGGCATGTTGGGTGCTATGCCTGATCCTGCCTTATTGACTCAGTTAATGCAAAATCCAGCCATTTCACAAATGATGCAAAGTATTCTTTCCAACCCACAGGCTATGAACCAGATTCTTGGTGTCAATCCTGAGCAGCGCGGTGTACCAGACCTTAATTCGCATCTTAGAGAAGTGATGCAAAATCCTGAGTTCCTTCGCATGTTTTCTTCGCCTGAGACAATGCAGCAACTCTTGTCTTTTCAGCAGACTCTTCTTTCTCAGCTTGGTCGGTCACCGTCAACCCAGGAATCAGGTCAGACTGGTGGAGGCACTGGAGCAATGAACAACACAGGGTTGGAGATGTTGATGAACATGTTTGGTGGACTTGGGGCTGGTAGTCTAGCTGTTCCGAACAGATCAAATGAGCCGCCGGAGCAATTGTATGCCACTCAGTTGTCACAGCTTCAAGAGATGGGCTTCTTTGACACTCAAGAGAACATTCGAGCTCTTGTTGCCACTTCAGGGAATGTTCATGCCGCAGTTGAACGACTTCTGGGGAATTCTGGTCAGTAG 1668 0.4706 MGGDSALDDATATQSKGSDGVSINVRCSNGSKFSVQISLESTVGLFKELVARNCDIPAEQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPSSTTNTTGGTNATGTNTTTNNARGASNEGGGLGGPGIGDSSFPGLGINGLGGSGVNGLFGAGLADLEQMQQPFLSNPNMMREMMNTPAIQNLINNPEIMRSLIMSNPQLRELMDRNPELAHILNDPATLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLDATTMAGNTGTDNSNPFAALLGTQVGQARDRSTNPSTTGAEATAGSPSPNTNPLPNPWGSTGTGGAQNNSPRTTTGGDARQQAPAAPAGLGGLGLQDFQGMLGAMPDPALLTQLMQNPAISQMMQSILSNPQAMNQILGVNPEQRGVPDLNSHLREVMQNPEFLRMFSSPETMQQLLSFQQTLLSQLGRSPSTQESGQTGGGTGAMNNTGLEMLMNMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALVATSGNVHAAVERLLGNSGQ 555
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1896 555 Pfam UBA/TS-N domain 513 549 IPR015940 -
Bisa11g1896 555 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 507 552 IPR015940 -
Bisa11g1896 555 Gene3D - 196 254 - -
Bisa11g1896 555 MobiDBLite consensus disorder prediction 94 121 - -
Bisa11g1896 555 FunFam Ubiquitin domain-containing protein DSK2b 496 554 - -
Bisa11g1896 555 CDD UBA_PLICs 513 551 - -
Bisa11g1896 555 PANTHER UBIQUILIN 16 550 IPR015496 -
Bisa11g1896 555 MobiDBLite consensus disorder prediction 460 481 - -
Bisa11g1896 555 Gene3D - 8 105 - -
Bisa11g1896 555 MobiDBLite consensus disorder prediction 299 364 - -
Bisa11g1896 555 SUPERFAMILY Ubiquitin-like 12 107 IPR029071 -
Bisa11g1896 555 MobiDBLite consensus disorder prediction 1 21 - -
Bisa11g1896 555 SMART uba_6 513 551 IPR015940 -
Bisa11g1896 555 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Bisa11g1896 555 MobiDBLite consensus disorder prediction 94 132 - -
Bisa11g1896 555 FunFam Ubiquitin domain-containing protein DSK2b 18 104 - -
Bisa11g1896 555 FunFam Ubiquitin domain-containing protein DSK2b 198 254 - -
Bisa11g1896 555 SMART ubq_7 21 92 IPR000626 GO:0005515
Bisa11g1896 555 MobiDBLite consensus disorder prediction 299 353 - -
Bisa11g1896 555 CDD Ubl_Dsk2p_like 21 93 - -
Bisa11g1896 555 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Bisa11g1896 555 SUPERFAMILY UBA-like 509 551 IPR009060 GO:0005515
Bisa11g1896 555 Gene3D - 495 555 - -
Bisa11g1896 555 SMART CBM 151 188 IPR006636 -
Bisa11g1896 555 SMART CBM 370 410 IPR006636 -
Bisa11g1896 555 SMART CBM 201 240 IPR006636 -
Bisa11g1896 555 SMART CBM 414 449 IPR006636 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bisa11g1896 Bisa-ChrBisa11 41146658 41152146 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1896 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 9.47e-07 46.6
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1896 11 41146658 41152146 Bisa01g2915 01 60224075 60232042 CCT
Bisa11g1896 11 41146658 41152146 Bisa11g1896 11 41146658 41152146 ECH