Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1857 ATGGCCGATTCTCCTCTAAGAAGGACTTCAAGGTCTCCATCCCCATGGAGAGCTCAGTCAAGATCAAGATCCAGGTCAAGGTCTTTGCCTAGGGATAGATCTAGGTCTCGGTCTCGATCAAGATCCTGGTCAAGGCATAGGCCAAGGTCTCGTTCAAGAAGCCGTGGCAGATCAAGGTCAAGAAGTCATGGCAGGGCTGAAGCTTCAAATCCTGGGAATACACTTTATGTTACTGGCCTATCTTCGAGGGTCACTGAGAGGGACCTAGAAGAGCACTTCTCTAAGGAGGGCAAGGTTGCTTCATGTTTTCTTGTGGTGGAACCTCGAACCCGTATTTCCCGTGGTTTTGCTTTTGTTACAATGGATACTGCTGAGGATGCAAGCCGCTGCATCAAGTATCTTAATCAATCTGTTCTAGAAGGTCGCTATATTACTGTTGAGCAGTCTCGGAGAAAAAGGCCAAGAACTCCTACTCCAGGGCACTATCTTGGGCTGAAAAATACTAGAGACTATGGTTACCGCGGTGACCGTGGAAGGTACCGTGGGTCTGGCCGGGATGACTATCCTTATCGTAGGTCACCGAGGCACTCCCCGTACCGAGGTGGTCGGGACTCATCTCTGCGACACTCACCCTATGGTGGAAGGTCTAGGAGGGAGAGATCAAGGTCGCTCCCTTATTCTCCTTATGGCAGCCCAGACAGGAGGTATGCTCGAGGGTCTAGGTGA 726 0.5083 MADSPLRRTSRSPSPWRAQSRSRSRSRSLPRDRSRSRSRSRSWSRHRPRSRSRSRGRSRSRSHGRAEASNPGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDASRCIKYLNQSVLEGRYITVEQSRRKRPRTPTPGHYLGLKNTRDYGYRGDRGRYRGSGRDDYPYRRSPRHSPYRGGRDSSLRHSPYGGRSRRERSRSLPYSPYGSPDRRYARGSR 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1857 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 144 IPR000504 GO:0003723
Bisa11g1857 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
Bisa11g1857 241 MobiDBLite consensus disorder prediction 38 60 - -
Bisa11g1857 241 SMART rrm1_1 74 147 IPR000504 GO:0003723
Bisa11g1857 241 MobiDBLite consensus disorder prediction 170 203 - -
Bisa11g1857 241 MobiDBLite consensus disorder prediction 1 77 - -
Bisa11g1857 241 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 157 - -
Bisa11g1857 241 MobiDBLite consensus disorder prediction 1 23 - -
Bisa11g1857 241 Gene3D - 11 158 IPR012677 -
Bisa11g1857 241 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 67 230 - -
Bisa11g1857 241 MobiDBLite consensus disorder prediction 148 241 - -
Bisa11g1857 241 SUPERFAMILY RNA-binding domain, RBD 67 180 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1857 Bisa-ChrBisa11 40612465 40615714 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1857 69 158 Eukaryotic Initiation Factors Gene Family AT1G49760 32.222 8.85e-07 47.4