Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1800 ATGGATGAAGCCAGCTTCATTTCACTAACCGCTCCCACTTCTCTATTATACATCATTCACAACATTCCCAAATTGTTAGGGGGTTCCACTCCAATGGCGGAGGTGAGATCTACTGGTGTGGTTCAGTGGTTCAACGATGCTAAAGGGTTTGGCTTTATCAAGCCTGACGATGGAGGAGAGGATCTCTTTGTTCATCAATCTTCCATCAGATCCGATGGTTATCGCAGTCTTGTAGAAGGCGATCGGGTCGAGTTCCTGATTGCCTCGGGTGACAGGGAGAAAACCAAGGCCATTGATGTCACTGGCCCTGATGGAGCTCCTCTACAATCCAAGAAAGACAATTACGGTGGCCGCGGCGGGGGCGGAGACGGGGGCTATGGCTTTAGCGGTGGTTGGAGAGGTGGGGACAGGCGCAACGGCGGCGGCGGAGGAGCTGGCGGTGCCGGCTGTTATCAGTGCGGTGATATTGGGCACTTAGCGAGGGATTGCAACCGGAGCAACAGTGCCGGTGGCGCGTCTTGTTTCAAATGTGGTGAGATTGGGCACTTGGCGAGGGACTGTTCGCGTGGAAACAACAGCGGTGGTGGTAGTGGGTCTTGCTTTAGGTGTGGTGAGTATGGGCACATGGCGAGGGACTGCACCAAGGCAAGCGGCGGCAGCGGTGGCGGTGGCGGTGGCGGAGGTTGTTTCAGATGTGGTGAAGTGGGTCATTTGGCCAGGGATTGCAGCAAAGACAGCGGGAGGTATGGCGGCAGCGGCGGCGGCGGTGCTGGAGGAAATTCTTGTTTTAATTGTGGGAAGCCTGGGCATTTCGCCCGAGAGTGCCCTGAAGCCTCTTGA 840 0.5607 MDEASFISLTAPTSLLYIIHNIPKLLGGSTPMAEVRSTGVVQWFNDAKGFGFIKPDDGGEDLFVHQSSIRSDGYRSLVEGDRVEFLIASGDREKTKAIDVTGPDGAPLQSKKDNYGGRGGGGDGGYGFSGGWRGGDRRNGGGGGAGGAGCYQCGDIGHLARDCNRSNSAGGASCFKCGEIGHLARDCSRGNNSGGGSGSCFRCGEYGHMARDCTKASGGSGGGGGGGGCFRCGEVGHLARDCSKDSGRYGGSGGGGAGGNSCFNCGKPGHFARECPEAS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1800 279 PANTHER COLD SHOCK DOMAIN PROTEIN 2 218 277 - -
Bisa11g1800 279 ProSitePatterns Cold-shock (CSD) domain signature. 50 69 IPR019844 -
Bisa11g1800 279 CDD CSP_CDS 38 102 IPR002059 GO:0003676
Bisa11g1800 279 SMART c2hcfinal6 173 189 IPR001878 GO:0003676|GO:0008270
Bisa11g1800 279 SMART c2hcfinal6 228 244 IPR001878 GO:0003676|GO:0008270
Bisa11g1800 279 SMART c2hcfinal6 199 215 IPR001878 GO:0003676|GO:0008270
Bisa11g1800 279 SMART c2hcfinal6 261 277 IPR001878 GO:0003676|GO:0008270
Bisa11g1800 279 SMART c2hcfinal6 149 165 IPR001878 GO:0003676|GO:0008270
Bisa11g1800 279 Gene3D - 31 114 IPR012340 -
Bisa11g1800 279 SMART csp_8 38 103 IPR011129 GO:0003676
Bisa11g1800 279 MobiDBLite consensus disorder prediction 97 120 - -
Bisa11g1800 279 SUPERFAMILY Retrovirus zinc finger-like domains 189 217 IPR036875 GO:0003676|GO:0008270
Bisa11g1800 279 ProSiteProfiles Zinc finger CCHC-type profile. 229 244 IPR001878 GO:0003676|GO:0008270
Bisa11g1800 279 ProSiteProfiles Zinc finger CCHC-type profile. 200 215 IPR001878 GO:0003676|GO:0008270
Bisa11g1800 279 SUPERFAMILY Retrovirus zinc finger-like domains 219 278 IPR036875 GO:0003676|GO:0008270
Bisa11g1800 279 SUPERFAMILY Retrovirus zinc finger-like domains 139 190 IPR036875 GO:0003676|GO:0008270
Bisa11g1800 279 Gene3D - 225 250 - -
Bisa11g1800 279 Gene3D - 168 194 - -
Bisa11g1800 279 Gene3D - 256 279 - -
Bisa11g1800 279 Gene3D - 195 222 - -
Bisa11g1800 279 ProSiteProfiles Zinc finger CCHC-type profile. 174 187 IPR001878 GO:0003676|GO:0008270
Bisa11g1800 279 PRINTS Cold shock protein signature 39 54 IPR002059 GO:0003676
Bisa11g1800 279 PRINTS Cold shock protein signature 75 93 IPR002059 GO:0003676
Bisa11g1800 279 PRINTS Cold shock protein signature 60 69 IPR002059 GO:0003676
Bisa11g1800 279 ProSiteProfiles Zinc finger CCHC-type profile. 262 277 IPR001878 GO:0003676|GO:0008270
Bisa11g1800 279 ProSiteProfiles Zinc finger CCHC-type profile. 150 163 IPR001878 GO:0003676|GO:0008270
Bisa11g1800 279 Gene3D - 133 167 - -
Bisa11g1800 279 Pfam Zinc knuckle 149 163 IPR001878 GO:0003676|GO:0008270
Bisa11g1800 279 Pfam Zinc knuckle 261 277 IPR001878 GO:0003676|GO:0008270
Bisa11g1800 279 Pfam Zinc knuckle 199 215 IPR001878 GO:0003676|GO:0008270
Bisa11g1800 279 Pfam Zinc knuckle 174 188 IPR001878 GO:0003676|GO:0008270
Bisa11g1800 279 Pfam Zinc knuckle 228 244 IPR001878 GO:0003676|GO:0008270
Bisa11g1800 279 SUPERFAMILY Nucleic acid-binding proteins 33 102 IPR012340 -
Bisa11g1800 279 ProSiteProfiles Cold-shock (CSD) domain profile. 36 102 IPR002059 GO:0003676
Bisa11g1800 279 Pfam 'Cold-shock' DNA-binding domain 38 102 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1800 Bisa-ChrBisa11 39782528 39784992 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Bisa11g1800 CSD 6.6e-25 CL0021