Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1774 ATGATGCGAACTAGAAATGCTGATTCTTCCAAAGCAGCATCGGCTAAGAACACACCACCGGCGAGGAAATCCGCATCTAAAAGCCCGGCGAATGCAAAATCCCCCCAGACAAAGCGCACGTCTACGATCAGAACAAGGCAAGCAAAGAAGAACGAGGACTCTCCCGTACAAAACATAAGCGTTGATGAGAAGCCGGAGCAATCATCTGAAGAGGCAAAAGCTGCGGCTGATGCTTCTCAGGTGATACCAGATACAAAAGTTGCTACAGCTGCAAAGTCAACACCAAAGAGGACACCAGGGAGACCTAGAAATTCAAATAAAGCGGTCTCCACCCGGAAACAGGGAGATCAAGTGGAGGCAATTGCTGATGGAACTCCAAAAGGGGACAATTTTGGGGTAGCTGAGAAATTGGAGGAGCCTCAAAATGTTGAACTAGTCAAAGCAGATGAGACTGAAAATACAAAAGTGGGGGAACAAGATGTTGGGTTTGTTGGACAATCTGCAGGGAATGAACAACAGCCCATTGAAGGGGATGAACCTATTGTTGAAAGTGCTTGTGAATTGGTAGAAAAGGAAAGAGACATAGTTGAAGTTGAAGTATCTGTCTCTCAAGATGCCCCCGTTTTGTTGAATCAAGAAGAACCTACCATGATGGAGCTCACTAAATCTCCGGAGAATGAAGATTCAACTGGTGTAGAAGAGGGAGAACAAGAAAAGGAAGAAAATGGAGAGAAAGCATCAGAAAAATCAATGGAAGAGGAGACACATACTATTGGACACAAAGAGCAATTTAATACTGGTGCTGTCAACACAGAAATGAAAGATCAGGAAGTGCGAGCAAAGGAAGAGGATGGTGAAAAATCATCAGAAAAATCAAAGGAAGAGGAGGCAAATAATATTGGACATAAGGAGCAATTTAATACTGATTCTGTTGACATGGAAATGAAAGACCAGGGAGAGCAAGCAGAAGAAGAGGATGGAGAAAAAGCACCGGAAAAATCAATGGAAGAGGATGGAAAAAAATCATTGGAAATATCAACAGAAGAGGAGACAAATAATATTGTACATAACCAGGAATCTATTACTGATTGTGTCGAGATGGAAATGAAAGACCAGGTGCAGCAAGATGATGTTAAACCTGATGAGGAGAATCTTAGTGGCGATCAAGGTATGCAGGGTTGTGGTGAAAAGCTGGATGTTGGAAAACAGGGGAAGGAGGAGCTTGTTGGGGATGATCCAGAGGAGCCTCTTGAAGAAACTGAGACATTGGATGAGGAGCACAGGGAATTAACAGCTATTGCGAAGGAGCGCAAGATTAAGAAAGAACATGAGATATTTGTAGGTGGGCTTGATCGTGATGCTACAGAGGAAGATCTGAAAAAGGTTTTTGAGAAGATTGGGGAGGTAGTAGAAGTTAGGCTGCATAAAAATTCTTCAACAAACAAAAATAAAGGCTATGCTTTTGTAAGGTTTTCTTGTAAGGAACATGCAAAGAAAGCTTTGTCGGAAATGAAGAATCCTGTTATATGTGGTAAGCGATGTGGCACTGCACCCAGTGAGGATAATGACACATTATTCTTGGGAAATATATGCAATACATGGACAAAAGAAGCTATCAAACAGAAGTTGAAGGACTATGGTATTGAGGGTGTTGAAAACATTACACTTGTCCCAGATGTTAAACGTGAAGGATTAAGCCGGGGCTTTGCATTCCTTGAGTTCTCTTGTCATGCTGATGCCATGCTTGCATATAAGAGGCTTCAGAAGCCTGATGTCATCTTTGGCCATGCTGAGCGAACTGCCAAAGTAGCTTTTGCTGAACCTGTGCGTGAGCCTGATCCAGAGATAATGGCACAGGTGAAATCTGTTTTTGTTGATGGTCTCCCTCCTCACTGGGATGAAGACCGCATTAGGGAGCATTTTAAAAATTATGGTGAAATTCTAAAAATTGTACTAGCCCGGAATATGTCTACTGCTAAGAGGAAAGATTTTGGATTTGTTGATTTTTCTACACATGAAGCTGCCGTAGCTTGTGTTGATGGTGTAAATGGTTCAGAATTTGTTGATGGGACATCAAAGACAAAAGTGAGAGCTAGACTTTCAAATCCTTTGCCTAAAACACAGGCCGTCAAGGGTGGCATGTGTGGTGGGTTCCGAATTGGTCATGCTAGGACTGGCTTCATTGCAAGATCTGGAGGAAGGGGTTTTGCACGGGGAGGACATGCCTTTAACAGGGGAAGTTTTAATAGGAATCAGAGTTTCTTTCATGGAGGACGTGGTCAAATTGGAAGACTGGGTTTCCAGAATGACCTTGATTTTCATCAGAGGCAACTTGGTATTCGAGGGGAAAGGATGGGACCTTTTAGGGGTGGACATTATGCGGGTGGCCAAGGTGCTGCTGCAGTCACTGGTCCATCTCGACCCTACCTTGATAGAGCATGGTATGGCGCCCCAGCCAGGGGCCCTGGTGAGCCTATTCCCCCAAGGATGCCATTCTCCTCAGAAGGACAGCTTGACAGGCCTTTTATGGGAAGGCATTTTGATGATCCGTATCTTTATGATGACAATGTGCATGGTGTGAAACGGCCATTTTATATGACTATCCTAATTATATGGGGCCTGTTAGTTTTCGTCCTCGATTGGATTATATAG 2652 0.4355 MMRTRNADSSKAASAKNTPPARKSASKSPANAKSPQTKRTSTIRTRQAKKNEDSPVQNISVDEKPEQSSEEAKAAADASQVIPDTKVATAAKSTPKRTPGRPRNSNKAVSTRKQGDQVEAIADGTPKGDNFGVAEKLEEPQNVELVKADETENTKVGEQDVGFVGQSAGNEQQPIEGDEPIVESACELVEKERDIVEVEVSVSQDAPVLLNQEEPTMMELTKSPENEDSTGVEEGEQEKEENGEKASEKSMEEETHTIGHKEQFNTGAVNTEMKDQEVRAKEEDGEKSSEKSKEEEANNIGHKEQFNTDSVDMEMKDQGEQAEEEDGEKAPEKSMEEDGKKSLEISTEEETNNIVHNQESITDCVEMEMKDQVQQDDVKPDEENLSGDQGMQGCGEKLDVGKQGKEELVGDDPEEPLEETETLDEEHRELTAIAKERKIKKEHEIFVGGLDRDATEEDLKKVFEKIGEVVEVRLHKNSSTNKNKGYAFVRFSCKEHAKKALSEMKNPVICGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVENITLVPDVKREGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPVREPDPEIMAQVKSVFVDGLPPHWDEDRIREHFKNYGEILKIVLARNMSTAKRKDFGFVDFSTHEAAVACVDGVNGSEFVDGTSKTKVRARLSNPLPKTQAVKGGMCGGFRIGHARTGFIARSGGRGFARGGHAFNRGSFNRNQSFFHGGRGQIGRLGFQNDLDFHQRQLGIRGERMGPFRGGHYAGGQGAAAVTGPSRPYLDRAWYGAPARGPGEPIPPRMPFSSEGQLDRPFMGRHFDDPYLYDDNVHGVKRPFYMTILIIWGLLVFVLDWII 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1774 883 MobiDBLite consensus disorder prediction 45 71 - -
Bisa11g1774 883 MobiDBLite consensus disorder prediction 206 225 - -
Bisa11g1774 883 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 443 521 IPR000504 GO:0003723
Bisa11g1774 883 FunFam Heterogeneous nuclear ribonucleoprotein Q 523 607 - -
Bisa11g1774 883 MobiDBLite consensus disorder prediction 371 396 - -
Bisa11g1774 883 MobiDBLite consensus disorder prediction 1 161 - -
Bisa11g1774 883 MobiDBLite consensus disorder prediction 140 156 - -
Bisa11g1774 883 SUPERFAMILY RNA-binding domain, RBD 611 725 IPR035979 GO:0003676
Bisa11g1774 883 SUPERFAMILY RNA-binding domain, RBD 444 588 IPR035979 GO:0003676
Bisa11g1774 883 CDD RRM_SF 445 514 - -
Bisa11g1774 883 Gene3D - 609 764 IPR012677 -
Bisa11g1774 883 Gene3D - 414 521 IPR012677 -
Bisa11g1774 883 MobiDBLite consensus disorder prediction 98 113 - -
Bisa11g1774 883 MobiDBLite consensus disorder prediction 1 42 - -
Bisa11g1774 883 MobiDBLite consensus disorder prediction 274 347 - -
Bisa11g1774 883 SMART rrm1_1 622 697 IPR000504 GO:0003723
Bisa11g1774 883 SMART rrm1_1 524 601 IPR000504 GO:0003723
Bisa11g1774 883 SMART rrm1_1 444 517 IPR000504 GO:0003723
Bisa11g1774 883 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 523 608 IPR000504 GO:0003723
Bisa11g1774 883 Gene3D - 522 607 IPR012677 -
Bisa11g1774 883 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 621 703 IPR000504 GO:0003723
Bisa11g1774 883 FunFam Heterogeneous nuclear ribonucleoprotein Q 398 517 - -
Bisa11g1774 883 CDD RRM_SF 623 687 - -
Bisa11g1774 883 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 270 867 - -
Bisa11g1774 883 CDD RRM_SF 525 588 - -
Bisa11g1774 883 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 525 593 IPR000504 GO:0003723
Bisa11g1774 883 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 623 687 IPR000504 GO:0003723
Bisa11g1774 883 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 445 513 IPR000504 GO:0003723
Bisa11g1774 883 MobiDBLite consensus disorder prediction 206 359 - -
Bisa11g1774 883 MobiDBLite consensus disorder prediction 236 260 - -
Bisa11g1774 883 FunFam Heterogeneous nuclear ribonucleoprotein Q 608 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1774 Bisa-ChrBisa11 39502210 39506413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1774 445 689 Eukaryotic Initiation Factors Gene Family AT2G23350 25.397 2.39e-16 81.6