Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1773 ATGTCGTCCACCGGAGAAGGTGATACTCCCATCGTTGAACAACCTGCAGAGAAGCCAAAACCAGCGATGAAGGAAAAGAAGCCCAAGGGATCTAAAGAGAAGAAGCCCAAACAACCCAAAACGGCTTCGCACCCTCCTTATTTTCAGATGATCAAAGAGGCGTTACTGGCTCTGAACGAGAAGGGCGGTTCTAGTCCTTACGCCATAGCCAAGCACATGGAAGAGAATCATAAGGCGGTTCTGCCTGCGAATTTCAGGAAGATCTTGGCTCTGCAGCTGAAGAACCAAACCGCGAAAGGAAAGCTCATCAAAATTAAGGCTTCCTACAAGCTTTCTTCTGAAGCTGGTAATGATAAGAAGGAAAAGGACAACGCTGGGAAGGCCACAAGGTCCACCACGCAGAAGAATCAGCGCCCAAAAAGAACTGTAGCTACTGCTGCGAAGGCCAAGACGTCTATGGACACCGAGAACACTAAGAAGGCCGGGAAGCCCGCGAAGAAAGTGGGAGTGAAGAAGACGAAGACGAAGACGAAGAAAACAACACCTGCGAAGCCGAAGCAACCTAAGTCCATCAAATCTCCTTCCAAGAGGGCTAGAAGAGCTACTGTCTCAGCTTCGTGA 621 0.4944 MSSTGEGDTPIVEQPAEKPKPAMKEKKPKGSKEKKPKQPKTASHPPYFQMIKEALLALNEKGGSSPYAIAKHMEENHKAVLPANFRKILALQLKNQTAKGKLIKIKASYKLSSEAGNDKKEKDNAGKATRSTTQKNQRPKRTVATAAKAKTSMDTENTKKAGKPAKKVGVKKTKTKTKKTTPAKPKQPKSIKSPSKRARRATVSAS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1773 206 PRINTS Histone H5 signature 57 74 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bisa11g1773 206 PRINTS Histone H5 signature 128 142 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bisa11g1773 206 PRINTS Histone H5 signature 30 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bisa11g1773 206 PRINTS Histone H5 signature 178 197 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bisa11g1773 206 CDD H15 41 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa11g1773 206 PANTHER HISTONE H1 18 188 - -
Bisa11g1773 206 MobiDBLite consensus disorder prediction 164 196 - -
Bisa11g1773 206 MobiDBLite consensus disorder prediction 1 48 - -
Bisa11g1773 206 MobiDBLite consensus disorder prediction 107 206 - -
Bisa11g1773 206 Gene3D - 38 128 IPR036388 -
Bisa11g1773 206 MobiDBLite consensus disorder prediction 113 128 - -
Bisa11g1773 206 SUPERFAMILY "Winged helix" DNA-binding domain 40 122 IPR036390 -
Bisa11g1773 206 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 43 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa11g1773 206 Pfam linker histone H1 and H5 family 44 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa11g1773 206 SMART h15plus2 41 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1773 Bisa-ChrBisa11 39466288 39467005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1773 50 111 Single Myb Histone (SMH) Gene Family AT1G49950 35.484 4.49e-07 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1773 11 39466288 39467005 Bisa11g1773 11 39466288 39467005 ECH