Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1757 ATGGAAAAATCAGAAGCACGACAGTGGAAGCAGCAGACCAAAAATCAAGGATTTCGACCTCCTCTTCACTTGTCGTATGCCCATCCAAAGCAGCAGACCAGAATCACGATGAAGACTGGAAAAAGAATTTCTCCTCTGTCACATGTTGTCTGCTATACAGTTTATCTGCATTTTCTGAGCTTCAAAGCTTGTAAATATGACAATGAAGTAGCTCTTTCTGAGGACGCCAAGCTGTCTACAAAGCTTTGGATGGGCATGCAATGCATCAGTTCCGAAGGGGTATGTCTGGCCATTCCTTCCTTTGTTCTAGACACCCACGTCATATGTCAGATCCTTAACCAATCAGACGGCGACGCAAATGAGAAGAAAAGTGAAAGAAAAGTGAAGAGCCAGGATGAGCGGCGATCACCGCGGGAGGCAGACAACAAGGAGTCTTTAAAGGATACCGCACTCTGTTTTCAAGCAGTGGGAATCCTCGATTTTTCAGCCTCGTCATCATCTCTTCCCTCTCTGTGTTCCTACCTTCCTCTTCTTCAGGCTGAAACAAAAATGGAGTGCGTGGAAGCAGCGTTGAAGACCAGTTTTCGGACAGACACAGGCATGAAATTGAACCCCCAGTGTTCCATAGAAGACTGGTCGGCTTTGAATGTCCCAAATGTCGCTCCTTCCGACGACTTGTTCGTCGACGAACTCCTCGATTTCTCCCACATGGAAGAAGTAGAAACACCAGAAGAAGATGAACAAAAGGATGGCTCTGGCTCTGGTTCTGTTTCCCCTCCACCACAACTCCAAAGCCACGAAATTTCAAACTTGGCCTCCACTTATGTGTCTGTGCCGTCTAGCGAACTCAGCGTTCCGGCCGATGACTTGGCAAACTTGGAGTGGTTGTCTCATTTCGTCGAGGACTCCTTCTCCGAATACTCCACAGCGTACCCCGCCGGGACTCCACCGGAAAAACCAAAGACCCATCTCGAGAAACGGCCTGAACCGCAAACCCCTGTCTCGGCCCACCCCTGTTTTCAAACTCCGGTTCCGGCCAAGGCCAGAAGCAAGAGGATGCGAACCGGCTGTCGGGTCTGGTCACTCGGGTCTCCGTCCTTCGCCGAGTCCTCCTCGAGCTCCACCACGTCTTCCTCCTCCTCGTCTCCCACGAGCCCCTGGTTAATTTTCACCAGCGCACCGACGGAGCAAGTCTGCTGGGAGGCGAAACCGCCGGCCAAAAAGCCAAAGAAGAAGACTTCGACGGACGCCGCGGCGGGGGCCGGTTCAGCAGCCCAGACCCCTCGCCGGTGCACCCATTGCGGGGTCCACAAGACGCCCCAGTGGCGAACCGGGCCGCTCGGAGCGAAAACGCTGTGCAACGCGTGCGGGGTCCGGTACAAATCGGGTCGGCTCTTACCCGAATACAGGCCCGCGTGCAGCCCGACATTCTCGAGCGAAATGCACTCGAACCACCACCGAAAAGTGCTGGAGATGCGGCGGAAGAAGGAGGGGATGGACGGAGTCGAGTCGGGTTTGGGCATTGCCCCGACCCCGGCGGTTCCCAGTTTTGGATAA 1557 0.5395 MEKSEARQWKQQTKNQGFRPPLHLSYAHPKQQTRITMKTGKRISPLSHVVCYTVYLHFLSFKACKYDNEVALSEDAKLSTKLWMGMQCISSEGVCLAIPSFVLDTHVICQILNQSDGDANEKKSERKVKSQDERRSPREADNKESLKDTALCFQAVGILDFSASSSSLPSLCSYLPLLQAETKMECVEAALKTSFRTDTGMKLNPQCSIEDWSALNVPNVAPSDDLFVDELLDFSHMEEVETPEEDEQKDGSGSGSVSPPPQLQSHEISNLASTYVSVPSSELSVPADDLANLEWLSHFVEDSFSEYSTAYPAGTPPEKPKTHLEKRPEPQTPVSAHPCFQTPVPAKARSKRMRTGCRVWSLGSPSFAESSSSSTTSSSSSSPTSPWLIFTSAPTEQVCWEAKPPAKKPKKKTSTDAAAGAGSAAQTPRRCTHCGVHKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSEMHSNHHRKVLEMRRKKEGMDGVESGLGIAPTPAVPSFG 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1757 518 FunFam GATA transcription factor 422 504 - -
Bisa11g1757 518 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 426 487 - -
Bisa11g1757 518 Gene3D - 422 498 IPR013088 GO:0006355|GO:0008270
Bisa11g1757 518 MobiDBLite consensus disorder prediction 401 425 - -
Bisa11g1757 518 MobiDBLite consensus disorder prediction 365 387 - -
Bisa11g1757 518 PANTHER GATA TRANSCRIPTION FACTOR 211 497 - -
Bisa11g1757 518 MobiDBLite consensus disorder prediction 120 143 - -
Bisa11g1757 518 CDD ZnF_GATA 430 486 IPR000679 GO:0006355|GO:0043565
Bisa11g1757 518 ProSiteProfiles GATA-type zinc finger domain profile. 425 461 IPR000679 GO:0006355|GO:0043565
Bisa11g1757 518 MobiDBLite consensus disorder prediction 239 264 - -
Bisa11g1757 518 ProSitePatterns GATA-type zinc finger domain. 431 456 IPR000679 GO:0006355|GO:0043565
Bisa11g1757 518 SMART GATA_3 425 479 IPR000679 GO:0006355|GO:0043565
Bisa11g1757 518 MobiDBLite consensus disorder prediction 309 352 - -
Bisa11g1757 518 Pfam GATA zinc finger 431 465 IPR000679 GO:0006355|GO:0043565
Bisa11g1757 518 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1757 Bisa-ChrBisa11 39139049 39147435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1757 188 517 C2C2-Gata Transcription Factor Family AT5G66320 50.000 1.43e-84 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bisa11g1757 GATA 1.7e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1757 11 39139049 39147435 Bisa01g4044 01 97308767 97311427 CCT
Bisa01g4044 01 97308767 97311427 Bisa11g1757 11 39139049 39147435 ECH
Bisa11g1757 11 39139049 39147435 Bisa11g1757 11 39139049 39147435 ECH