Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1753 ATGGGACGAGGGAAGATTGAGATCAAGTTGATAGAGAACTCCACGAACAGGCAGGTCACCTACTCCAAACGACGCAATGGAATCTTCAAGAAAGCTCACGAACTCAGTGTTCTGTGTGATGCTAAGGTCTCCCTCATCATGTTCTCCAAAAACAGCAAGATGCACGAATACATCACCCCTGGCCTTACAACCAAGAAGATGATTGATCAGTACCAGAAGGCTCTGGGGAATATTGATCTGTGGCGTGCCCATTATGAGAGAATGCTTGAAAATTTGAGAAAACTAAAAGAGATCAACAATAAACTTAGAAGACAGATCAGGAATAGGCTAGGTGCAGATTTGGAGGATCTGAGCTTCGAGCAACTACTCAGTCTTGAGGAAGACATAGTCTCTTCCTCAGGGGTAATACGCGAACGAAAGCTCCATGTGATCAAAACTCGGACTGATACGTGCAAGAAAAAGGTTAAAAATTTAGAGCAGGTTAACGGAACTCTGCTACTCGAAATTAAGAATAAGTTTATGATCCATCCACAATATATAGTGCACGAAGGAGGAGTAAATCAAGAATCAGCAGTTACATCGACCAACGATGCCTCCAACCTCTATGCATTTTATCAGAACCATCACCACTATCACCATCATCATGACGGAGGAACGGGGTTTAAATCTCACAATCTTCGTCTCGCTTGA 690 0.4304 MGRGKIEIKLIENSTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNSKMHEYITPGLTTKKMIDQYQKALGNIDLWRAHYERMLENLRKLKEINNKLRRQIRNRLGADLEDLSFEQLLSLEEDIVSSSGVIRERKLHVIKTRTDTCKKKVKNLEQVNGTLLLEIKNKFMIHPQYIVHEGGVNQESAVTSTNDASNLYAFYQNHHHYHHHHDGGTGFKSHNLRLA 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1753 229 Coils Coil 85 105 - -
Bisa11g1753 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa11g1753 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa11g1753 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa11g1753 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa11g1753 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa11g1753 229 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Bisa11g1753 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Bisa11g1753 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Bisa11g1753 229 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa11g1753 229 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Bisa11g1753 229 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Bisa11g1753 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa11g1753 229 ProSiteProfiles K-box domain profile. 85 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1753 Bisa-ChrBisa11 39113683 39115196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1753 1 215 MADS-box Gene Family AT3G54340 47.465 9.05e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa11g1753 K-box 8.9e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1753 11 39113683 39115196 Bisa11g1753 11 39113683 39115196 ECH