Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1697 ATGAGAACGGGGAAGATTGATAATTTCGAGAGACTAGATTATCAATTTAGTTGCAATGCAAACCTCGCTAAATTGGTTTGGTCAGTGTTTCAAAGCGTTGAACCTTCAGTTTCAGGTTTTCTGTTGGGTGGAAGATTGATATGTTGTGCAAACATGTCTTTAAGAAGCATAGTTCGTGAACTAAAGGAGATGCGAGATGGAATGGGCAGCATATCAAGGCGAAGTTCTGATAACAAGCTGTGGCACAGTCGGACAAAGTCACATATTGCTCCTGATGTTTCTCTGCCCCCAGTTGAACCTATTCAACAGGGACGATGGGCAAATCTCCCACCTGAATTGCTCTTGGACATAATCAGAAGTGTGGAAGAGAGTGAGACAGCTTGGCCTGCTCGTGTTGTCATTCTATCTTGTGCTTCAGTTTGTAGATCTTGGAGAACCATTACAAAGGAGATTGTTAAGACTCCCGAGCAATGTGGAAGGCTCACATTTCCTATCTCATTGAAGCAGCCGGGGCCTCGTGATTCTCCAATACAATGCTTTATCAGGAGGAACAGAGAAACTTCTACTTATTTATTGTATTTTGGTCTGGTGCCATCGGAGAATGAGAATGATAAGTTGTTATTAGCTGCCAAAAAGATGAGAAGGGCTACAGGCACAGACTTCGTTATATCTTTGGTCACAGATGATTTTTGTCGGGCCAGCAAAACATATGTGGGCAAACTAAGGTCTAATTTTTTGGGTACCAAGTTCGCAATATATGACAGCCAACCTCCACACGAAGCTGGAGTTCAACAGAACAGTCATTCAAGTCGTAGATTTCACTCTAAGCGGGTGTCTCCAAGAGTTCCAGCATGTAACTATAATGTTGGCACCATTGCCTATGAGCTCAATGTACTTCGCTCCAGAGGGCCCAGGAGAATGCACTGTATCATGAACTCTATCCCTGTATCAGCTATTCAGGAAGGGGGCACTGCCCCAACTCCTACATCATTTCCTGATATCTTCGATGAGCGGTTTTCTCCCTCACCGGCGCTAAAAGGAAAACATCCAATTACAGAATTGAACTCTGCAAGCCACTCTGAGTCCCCAGGATTGTTACAGGGCTCAATGGAGCCGCTGGCTCTTAAAAACAAGGCTCCTAGATGGCATGAACAGCTGCAGTGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCATCTGTTAAGAATTTCCAGCTTGTGGCTGCTGTTGATCCATCTCATAATGTTTCTGCTGAAGAACAAGAAAAGGTAATCTTGCAATTTGGTAAGATAGGAAAAGACATATTTACCATGGATTACCGTTATCCACTCTCTGCATTTCAAGCCTTCGCCATCTGCTTGAGCAGCTTTGATACTAAACCAGCCTGCGAATGA 1398 0.4413 MRTGKIDNFERLDYQFSCNANLAKLVWSVFQSVEPSVSGFLLGGRLICCANMSLRSIVRELKEMRDGMGSISRRSSDNKLWHSRTKSHIAPDVSLPPVEPIQQGRWANLPPELLLDIIRSVEESETAWPARVVILSCASVCRSWRTITKEIVKTPEQCGRLTFPISLKQPGPRDSPIQCFIRRNRETSTYLLYFGLVPSENENDKLLLAAKKMRRATGTDFVISLVTDDFCRASKTYVGKLRSNFLGTKFAIYDSQPPHEAGVQQNSHSSRRFHSKRVSPRVPACNYNVGTIAYELNVLRSRGPRRMHCIMNSIPVSAIQEGGTAPTPTSFPDIFDERFSPSPALKGKHPITELNSASHSESPGLLQGSMEPLALKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAEEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1697 465 Gene3D Tubby Protein; Chain A 164 465 IPR025659 -
Bisa11g1697 465 PANTHER TUBBY-RELATED 86 463 - -
Bisa11g1697 465 ProSitePatterns Tub family signature 2. 450 465 IPR018066 -
Bisa11g1697 465 SUPERFAMILY F-box domain 99 149 IPR036047 GO:0005515
Bisa11g1697 465 SUPERFAMILY Tubby C-terminal domain-like 155 465 IPR025659 -
Bisa11g1697 465 ProSitePatterns Tub family signature 1. 393 406 IPR018066 -
Bisa11g1697 465 PRINTS Tubby superfamily signature 443 465 IPR000007 -
Bisa11g1697 465 PRINTS Tubby superfamily signature 375 392 IPR000007 -
Bisa11g1697 465 PRINTS Tubby superfamily signature 221 237 IPR000007 -
Bisa11g1697 465 PRINTS Tubby superfamily signature 286 313 IPR000007 -
Bisa11g1697 465 PRINTS Tubby superfamily signature 393 409 IPR000007 -
Bisa11g1697 465 PRINTS Tubby superfamily signature 237 261 IPR000007 -
Bisa11g1697 465 PRINTS Tubby superfamily signature 422 441 IPR000007 -
Bisa11g1697 465 Pfam F-box domain 106 153 IPR001810 GO:0005515
Bisa11g1697 465 Gene3D - 100 153 - -
Bisa11g1697 465 Pfam Tub family 167 460 IPR000007 -
Bisa11g1697 465 CDD F-box_AtTLP-like 106 150 - -
Bisa11g1697 465 FunFam Tubby-like F-box protein 163 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1697 Bisa-ChrBisa11 38366224 38368666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1697 52 465 TUB Transcription Factor Family AT2G18280 64.251 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bisa11g1697 Tub 1.4e-107 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1697 11 38366224 38368666 Bisa11g1697 11 38366224 38368666 ECH