Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1683 ATGATGCACCGTTGCAGCAGCTCACAGGGGCACGTGATGGGACCCTGCACATGTGGTATGTTTCATAGCCAAACCAACTCCTTCTCTATGCTCTTCTCGATGCCCAACCACAAATCCTATGACGAACCCGACATGTATTCCTTCACGCCCTCCCCTTCCTCTTCTTCCGTTGACTGCACCCTCTCTCTGGGCACTCCCTCCACGCGTCTAACTGAAGACGAGGAAAAACGAAACCGCCATGAACACCGCTCTGTTTCAAACTTTTGCTGGGATTTATTACAATCCAAACGCACCCCTCAATCCCACACCAAATCCAGCCGTACCACCAATGGCTCTAACTCGTCCAATGATCCCCTCCTTGCTCGTCGCTGTGCCAACTGTGACACCACTTCCACACCCCTCTGGAGAAACGGCCCTAGAGGCCCCAAGTCACTATGCAATGCCTGTGGGATTAGATTTAAGAAGGAAGAGAGAAGGGCGAGTGCGGTGGCGGCCACGGCGGCGGCGGCCAACTCAGGCGGTGTAATGGAGTCGGAGCAGGTGTATAGCCACCACAATGGTTCGTGGTACGGGCACTCGCAGAGCCAGAAACTACAGTGTCTCTCGCCGGCGATGGGCGGCGAATTTCGGTTCGTGGATGACGGCGATCGGGACCCCGAGAACGGCATTCCGTTTCTCTCGTGGAGACTAAACGTCACGGACAGACCGAGCCTCGTCCACGACTTTACGAGATGA 735 0.5551 MMHRCSSSQGHVMGPCTCGMFHSQTNSFSMLFSMPNHKSYDEPDMYSFTPSPSSSSVDCTLSLGTPSTRLTEDEEKRNRHEHRSVSNFCWDLLQSKRTPQSHTKSSRTTNGSNSSNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAVAATAAAANSGGVMESEQVYSHHNGSWYGHSQSQKLQCLSPAMGGEFRFVDDGDRDPENGIPFLSWRLNVTDRPSLVHDFTR 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1683 244 Gene3D - 120 179 IPR013088 GO:0006355|GO:0008270
Bisa11g1683 244 MobiDBLite consensus disorder prediction 96 120 - -
Bisa11g1683 244 PANTHER GATA TRANSCRIPTION FACTOR 18 10 244 IPR044272 GO:0003700|GO:0009908
Bisa11g1683 244 MobiDBLite consensus disorder prediction 49 79 - -
Bisa11g1683 244 MobiDBLite consensus disorder prediction 49 68 - -
Bisa11g1683 244 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 121 159 - -
Bisa11g1683 244 ProSitePatterns GATA-type zinc finger domain. 124 149 IPR000679 GO:0006355|GO:0043565
Bisa11g1683 244 Pfam GATA zinc finger 124 158 IPR000679 GO:0006355|GO:0043565
Bisa11g1683 244 ProSiteProfiles GATA-type zinc finger domain profile. 118 154 IPR000679 GO:0006355|GO:0043565
Bisa11g1683 244 CDD ZnF_GATA 123 155 IPR000679 GO:0006355|GO:0043565
Bisa11g1683 244 SMART GATA_3 118 170 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1683 Bisa-ChrBisa11 38127378 38128540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1683 17 244 C2C2-Gata Transcription Factor Family AT3G50870 43.448 4.82e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bisa11g1683 GATA 5.9e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1683 11 38127378 38128540 Bisa01g1857 01 32328072 32330271 CCT
Bisa11g1683 11 38127378 38128540 Bisa11g1683 11 38127378 38128540 ECH