Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1667 ATGGAGGAGAGGAACGGAGTAAAAAGCGAGGAATATACGGAGTCACCGATTTTGGTACAGGAAGATAAGTGTTACTGTTTTCCCGATAACTTGCTCATGTTGCTTGTGTTTCTGCTTTACCTGCTCTTTTCAAATGCAAAGAAAGCGACTGAGGAAGTAGATATTAAGAATGGAGAGGTTTTATTTATATCAAGGTCAATGGCAGAAGAGGAAGAAAATCTTTTTGAAGCTCGGATCAAGGAAGAGGAGGAGGAAACCAAACACGAACCAGAGGAGGCACCCAACTTGAATCAAACTCAGTTTAGCAAGTTGGATGAGCTCTTAACACAAACTCAACTTTACTCGGAATTTCTACTGGAGAAAATGGACGACATCACTCTTAATGGAGTTGAACAAGGCGATGAACCAGTTGAAAAAAAGAAGGGCCGTGGCTCAAAGAGAAAAGCAAATTCAGAATATGCTAATAAGAAAGCCAAAAGGGCAGTTGCTGCCATGCTTACAAGATCTCAAGAAAATGAGAAAACTGAAGATATGAACCTGAGTGAAGAGGAAAGAATTGAGAAGGAGCAGAAAGAGCTTATACCTCTGTTGACGGGTGGAAAGTTGAAGCAGTATCAAATGAAGGGTGTCAAGTGGTTGATCTCCTTGTGGCAAAATGGATTGAATGGTATTTTGGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACTATTGGTTTTCTTGCACATTTAAAAGGGAAAGGTTTGGATGGCCCATACTTGATAATTGCTCCTCTATCAACCCTCTCAAACTGGGTGAATGAAATTTCTCGGTTTGCTCCAACCCTCACTGCTATAATTTACCATGGTGACAAGAAGGAAAGGGATGACCTCCGAAGGAAATACATGCCCAGAACAATTGGCCCAAAATTTCCCATCGTCATCACTTCCTATGAAGTTGCATTAAATGATGCAAAGAAATATCTCAGATTCTACCAGTGGAAATATGTTGTAATTGATGAGGGGCACAGGCTCAAGAACTCAAAATGCAAATTAGTGCAGATGTTGAAATTCTTACCTATAGAAAATAAGCTTTTATTAACTGGGACACCTCTTCAGAATAACTTGGCTGAGCTATGGTCATTGTTGAACTTCATTTTACCTGACATTTTCTCGTCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCAGTAATGGAGCAACAAAAGAAGAATTAGAAGAGAAAAGAAGAGCCCAGGCATGCATCATTAAGATAGCTTCTGTGGTAGCTAAGCTCCATGCCATTCTGCGCCCGTTTCTTCTGCGAAGGATGAAGAGCGATGTTGAGCAGATGTTGCCACGAAAGAAGGAAATTATTATATATGCAAATATGACTGAACATCAGAAGAATTTTCAGGAACATTTAATTAATAAGACATTGGAGGACTATTTACGTGAAAAATCTGCAACTGGACGGGCTTCAAAAAAGCTTAATAATGTGGCCATTCAACTTAGGAAGAACTGTAATCATCCTGACCTCTTAGAGTCGGCCTTTGATGATACCTCTTTGTATCCACCTGTCAATGAGATTGTTGAACAATGTGGGAAATTCCATTTGTTGGACCGTTTGTTGGCTCGATTATTTGCACGGAAGCACAAAGTTCTAATCTTCAGCCAGTGGACTAAAATATTGGATATAATGGATTATTATTTTAGTGAAAAGGGCCTTGAAGTTTGCAGAATTGATGGTAGTGTGAAACTAGATGAAAGGAAAAGACAGATTCGGGACTTCAATGATGTGAACAGCAATCACAGGATCTTTCTTCTCAGTACTAGGGCTGGTGGACTGGGAATTAACCTTACTGCAGCAGACACTTGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCATAGAATAGGTCAAACTAAGCCTGTTCATGTTTACAGGCTTGCAACAGCTCAATCTGTGGAGGGTCGCATGCTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGGGAAAGGGCATTTTCATCTAGAACGAATGAAGCCCAATAATATGGAGATTACAGAGGAAGAGGACTTGTTGGCCTTGCTTAAAGAGGAAGAATCTGCTGAAGACAAAGCTATCCAAACAGATATCAGTGATGAAGACTTGGAGAAGCTTTTGGATCGCAGTGATCTTATTTCTGAAAACTTAAATTGTCCAGGCAATAGTTTTCCTCTTAAAGGCCCTGGATGGGAGGTGGTGATTTCATCTGGAACTGGGAACATGCTTTCCACTCTTAACAGCTAA 2322 0.404 MEERNGVKSEEYTESPILVQEDKCYCFPDNLLMLLVFLLYLLFSNAKKATEEVDIKNGEVLFISRSMAEEEENLFEARIKEEEEETKHEPEEAPNLNQTQFSKLDELLTQTQLYSEFLLEKMDDITLNGVEQGDEPVEKKKGRGSKRKANSEYANKKAKRAVAAMLTRSQENEKTEDMNLSEEERIEKEQKELIPLLTGGKLKQYQMKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLIIAPLSTLSNWVNEISRFAPTLTAIIYHGDKKERDDLRRKYMPRTIGPKFPIVITSYEVALNDAKKYLRFYQWKYVVIDEGHRLKNSKCKLVQMLKFLPIENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCSNGATKEELEEKRRAQACIIKIASVVAKLHAILRPFLLRRMKSDVEQMLPRKKEIIIYANMTEHQKNFQEHLINKTLEDYLREKSATGRASKKLNNVAIQLRKNCNHPDLLESAFDDTSLYPPVNEIVEQCGKFHLLDRLLARLFARKHKVLIFSQWTKILDIMDYYFSEKGLEVCRIDGSVKLDERKRQIRDFNDVNSNHRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIGKGHFHLERMKPNNMEITEEEDLLALLKEEESAEDKAIQTDISDEDLEKLLDRSDLISENLNCPGNSFPLKGPGWEVVISSGTGNMLSTLNS 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1667 773 SMART ultradead3 198 393 IPR014001 -
Bisa11g1667 773 Pfam Helicase conserved C-terminal domain 536 646 IPR001650 -
Bisa11g1667 773 Gene3D - 446 745 IPR027417 -
Bisa11g1667 773 FunFam Chromatin complex subunit A 106 450 677 - -
Bisa11g1667 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 440 IPR027417 -
Bisa11g1667 773 PANTHER SNF2/RAD54 HELICASE FAMILY 52 713 - -
Bisa11g1667 773 SMART helicmild6 562 646 IPR001650 -
Bisa11g1667 773 MobiDBLite consensus disorder prediction 133 154 - -
Bisa11g1667 773 MobiDBLite consensus disorder prediction 130 154 - -
Bisa11g1667 773 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 536 699 IPR001650 -
Bisa11g1667 773 Coils Coil 172 192 - -
Bisa11g1667 773 Pfam SNF2-related domain 205 510 IPR000330 GO:0005524|GO:0140658
Bisa11g1667 773 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 214 382 IPR014001 -
Bisa11g1667 773 CDD SF2_C_SNF 522 656 - -
Bisa11g1667 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 442 739 IPR027417 -
Bisa11g1667 773 Gene3D - 166 428 IPR038718 -
Bisa11g1667 773 FunFam ATP-dependent DNA helicase DDM1 196 449 - -
Bisa11g1667 773 Coils Coil 65 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1667 Bisa-ChrBisa11 37891910 37897877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1667 188 667 RAD5 or RAD16-like Gene Family AT3G16600 25.719 3.71e-32 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa11g1667 SNF2_N 5e-66 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1667 11 37891910 37897877 Bisa11g1667 11 37891910 37897877 ECH