Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1665 ATGGGAGACTACAACGATGCTTTCATGCGCAATCAAAACGCCGCCGTTCAGGCTCGTACCAAAGCCCAGAACCGTGCCAACGTCCTCCAGCTCAAGCTGATTGGACAGAGTCATCCAACTGGTCTCACAGCCAACCTTTTGAAGCTTTTTGAGCCTAGGCCTCCATTGGAGTATAAACCACCTCCAGAAAAAAGAAAATGTCCACCATTAACAGGGATGGGACAATTTGTGAGTAAGTTTGCCGAACCTGGAGATCCTGAATATGCTCCTCCTGTCCAAGAAGCTGAAACTCCTGCACAAAGAAGGGCTAGAATACACAAGCTAAGATTAGAGAAAGGAGCAGAAAAGGCTGCTGAGGAGCTAGAGAAATATGATCCACATAATGACCCAAATGTATCAGGAGATCCCTACAAGACCTTGTTTGTGGCAAGACTTAGCTACGAGACCACCGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTGGTTACAGACAAAAATACAAACAAGCCCAAGGGTTATGCATTCATTGAGTACCTGCATACAAGGGATATGAAAGCTGCTTATAAACAAGCTGACGGTAGGAAAATTGAGGGTAGAAGGGTGCTTGTGGATGTTGAACGTGGGAGGACTGTTCCTAATTGGAGACCTCGCCGGCTAGGTGGTGGGCTTGGTACTACTAGAGTAGGAGGTGAAGAAGTTAATCAGCGATATTCTGGGAGGGAGCAAATGCAATCGGGACCTTCTCGTTCTGAAGAACCAAAAGTGCGGGAGGAACGACAGGGTGATCGGGATAGAGAAAAATCCCGTGAAAGAGCTAGGGACAGAGATAGAGAACGGGAGCGATCACGCGAACGCTCTCATGACAGGACTCGTAGTCGTGATCATAGAGAGGATAGGCACCACAGAGATCGGGATAGGACTAGGGACAGAGATAGGGAAAGAGAAAGAGATCGTGGACGTGATAGAGATAGAGATCGTGGTCGAGATCGGGAGCGAGGCCGAGATCGTGACAGGGATAGGGACCGTGATAGGGATAGAGATAATGATCGCCATCGTGAAAGGGATAGAGATTATGAAGTTGGGGACCATGATCGGGGTCGATCGCATGATAGGGAATCTGATTATGACCGTGTTGAATCTAAACATGAGAGGGACCGACATGGTGAAAGGGAACGAGACTATGAACCTGAGGATGATCGTGGTTGATGA 1233 0.4793 MGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMGQFVSKFAEPGDPEYAPPVQEAETPAQRRARIHKLRLEKGAEKAAEELEKYDPHNDPNVSGDPYKTLFVARLSYETTESRIKREFESYGPIKRVRLVTDKNTNKPKGYAFIEYLHTRDMKAAYKQADGRKIEGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRYSGREQMQSGPSRSEEPKVREERQGDRDREKSRERARDRDRERERSRERSHDRTRSRDHREDRHHRDRDRTRDRDRERERDRGRDRDRDRGRDRERGRDRDRDRDRDRDRDNDRHRERDRDYEVGDHDRGRSHDRESDYDRVESKHERDRHGERERDYEPEDDRGX 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1665 410 CDD RRM_snRNP70 137 227 IPR034143 GO:0030619
Bisa11g1665 410 SMART rrm1_1 139 212 IPR000504 GO:0003723
Bisa11g1665 410 FunFam U1 small nuclear ribonucleoprotein 70 kDa 125 250 - -
Bisa11g1665 410 MobiDBLite consensus disorder prediction 54 92 - -
Bisa11g1665 410 MobiDBLite consensus disorder prediction 223 410 - -
Bisa11g1665 410 Gene3D - 125 250 IPR012677 -
Bisa11g1665 410 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 59 333 - -
Bisa11g1665 410 MobiDBLite consensus disorder prediction 258 410 - -
Bisa11g1665 410 SUPERFAMILY RNA-binding domain, RBD 126 238 IPR035979 GO:0003676
Bisa11g1665 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Bisa11g1665 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Bisa11g1665 410 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 41 129 IPR022023 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1665 140 186 C2H2 Transcription Factor Family AT2G19380 40.426 6.37e-07 49.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1665 11 37872068 37877185 Bisa11g1665 11 37872068 37877185 ECH