Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1643 ATGAATCCTCATCCTATTGAAGATCATATGGTGCTCATCTCTCAGCTATATTCCGGTGCTTACTCTCAAATAATTCCTCAACAAGGTTTCCATCTTTGGGAGACAAAGCCAAGACGACGTCGTAAGAAGAACAAAGGAGGAGAAAACGGAGGCGGGGGAGTTAAGAAGAGGAAGCTGAGTGCAGAGCAAGTGAATCTTCTAGAACAAAACTTCGGCAACGAACATAAATTGGAATCTGAACGGAAGGACCGTCTCGCATCGGAGCTGGGCTTGGATCCACGTCAAGTGGCCGTGTGGTTCCAAAACCGAAGGGCCCGTTGGAAGAACAAGAAGTTGGAGGAAGAGTACTCCAGCCTTAAGAAAGCCCACGAGTCCACCATTCTCGAGAAATGCCGTCTTGAATCCGAGGTGCTGAAGCTGAAGGAGCAGCTTTCAGAAGCAGAGAAAGAGATTCAACGGCTTCTGGAGCGAGGAGATAGGGCGTCGAGCAGTAACAGCCCCAGTTCATCACACTCAGTGGAAGCTGTGGACCCACCATTCCTGGGAGAGTTTGGAGTGGCGGCTTATGATGATGATGTGTTTTACATGCCACACACCCATTACATCAGTGGCATGGATATTGAATGGATATATATGTGA 639 0.4836 MNPHPIEDHMVLISQLYSGAYSQIIPQQGFHLWETKPRRRRKKNKGGENGGGGVKKRKLSAEQVNLLEQNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSSLKKAHESTILEKCRLESEVLKLKEQLSEAEKEIQRLLERGDRASSSNSPSSSHSVEAVDPPFLGEFGVAAYDDDVFYMPHTHYISGMDIEWIYM 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1643 212 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Bisa11g1643 212 CDD homeodomain 57 111 IPR001356 GO:0003677
Bisa11g1643 212 Gene3D - 48 119 - -
Bisa11g1643 212 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Bisa11g1643 212 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Bisa11g1643 212 SMART HOX_1 53 114 IPR001356 GO:0003677
Bisa11g1643 212 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 43 171 IPR045224 GO:0003700
Bisa11g1643 212 FunFam homeobox-leucine zipper protein ATHB-40 49 118 - -
Bisa11g1643 212 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Bisa11g1643 212 MobiDBLite consensus disorder prediction 32 59 - -
Bisa11g1643 212 Pfam Homeodomain 56 109 IPR001356 GO:0003677
Bisa11g1643 212 SUPERFAMILY Homeodomain-like 54 119 IPR009057 -
Bisa11g1643 212 MobiDBLite consensus disorder prediction 158 173 - -
Bisa11g1643 212 MobiDBLite consensus disorder prediction 155 174 - -
Bisa11g1643 212 Coils Coil 102 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1643 Bisa-ChrBisa11 37633036 37634666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1643 1 206 Homeobox Transcription Factor Family AT2G18550 55.909 1.46e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Bisa11g1643 Homeodomain 7.4e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1643 11 37633036 37634666 Bisa01g1889 01 32917806 32919573 CCT
Bisa11g1643 11 37633036 37634666 Bisa11g1643 11 37633036 37634666 ECH