Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1622 ATGCCTTTTCACACCTTCAATTCCATCCTCTGCCACTCTGTTTTGGCTATTGCATTAATCCTCACTCTTTTCCCTCCCAATTCTGAAGCCAAGCAGCTGAACACCAATGTGATTGACGATTGCTGGAGATGGAACCCCGATTGGCGCAGACACAGGCCGCAGCTCGCCACCTGCTCTGTGGGCTACGCTGGCAAGATGACCAACAACATTGGGCATGACCTTGTCCACTATAAAGTCACCGACCCCAGCGACGACCCCATTAACCCCAAACCTGGCACCTTGAGATATGGAGCTTCCATGATCCAAGCCAGAGTGTGGATCACTTTCAAATCAGACATGCACATCCACCTCCTCAGACCCCTCCTCATCAGCAGCTTCACCGCCATTGATGGCCGCGGCGTCAACGTTCACATTGCCCACAATGCATGCCTCATGATCTTCAAGGCGAGCGACATAATAATCCACGGCATTCGGATTCACCACTGTAGGCCTCAGGCTGCAGGGATGGTGATGGGTCCAGAAGGGAAGGTCATTGAAGTGGGTCAGGTAGATGGAGACGCAGTCAGATTGGTCAGTGCCTCCAAGATTTGGATTGACCATAACACGCTATATGATTGTCAAGACGGCCTTCTGGATGTGACCAGGGGTTCCACCGATGTGACCATCTCCAACAATTGGTTCAGAGACCAAGACAAAGTCATGCTTCTCGGCCACGATGATGGCTACGTCAGAGACCGCAACATGAAGGTCACTGTTGTGTACAACCATTTTGGACCTAATTGCAACCAACGCATGCCCAGGATTCGTCATGGATATGCACATGTGGCCAACAATCTGTACCAAGGGTGGGTGCAATATGCTATTGGTGGAAGCATGGAACCCAGCCTCAAGAGCGAAGCCAACCTGTTTATAGCACCAACATCTGGAAGTAAAGAGGTGACATGGAGAAATGGGAATAATGGAAGTGGGGGAAGTTGGGAATTTCATTCAGTGGGGGATGTGTTTGAAAACGGAGCATGCTTCACGGAAACACAAGGAGGACGTGTGCCGAAGCCTAAGTATAACATGGAACAACAATTTAAAGTTGCAGATGCCAACTCTGTCAGATCATTGACAAGGACGTCTGGCGCATTACGATGCAGCAAAACCTCTACATGTTGA 1161 0.4996 MPFHTFNSILCHSVLAIALILTLFPPNSEAKQLNTNVIDDCWRWNPDWRRHRPQLATCSVGYAGKMTNNIGHDLVHYKVTDPSDDPINPKPGTLRYGASMIQARVWITFKSDMHIHLLRPLLISSFTAIDGRGVNVHIAHNACLMIFKASDIIIHGIRIHHCRPQAAGMVMGPEGKVIEVGQVDGDAVRLVSASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFRDQDKVMLLGHDDGYVRDRNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSEANLFIAPTSGSKEVTWRNGNNGSGGSWEFHSVGDVFENGACFTETQGGRVPKPKYNMEQQFKVADANSVRSLTRTSGALRCSKTSTC 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1622 386 SUPERFAMILY Pectin lyase-like 36 376 IPR011050 -
Bisa11g1622 386 Gene3D - 35 379 IPR012334 -
Bisa11g1622 386 SMART amb_all 112 309 IPR002022 -
Bisa11g1622 386 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Bisa11g1622 386 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Bisa11g1622 386 PRINTS Pollen allergen Amb family signature 326 350 IPR018082 -
Bisa11g1622 386 PRINTS Pollen allergen Amb family signature 83 108 IPR018082 -
Bisa11g1622 386 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Bisa11g1622 386 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Bisa11g1622 386 PRINTS Pollen allergen Amb family signature 357 380 IPR018082 -
Bisa11g1622 386 Pfam Pectate lyase 127 303 IPR002022 -
Bisa11g1622 386 PANTHER PECTATE LYASE 18-RELATED 30 383 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1622 Bisa-ChrBisa11 37021397 37022800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1622 66 318 Polysaccharide Lyase AT5G09280 69.960 8.84e-143 405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1622 11 37021397 37022800 Bisa11g1622 11 37021397 37022800 ECH