Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1616 ATGGGTTGGTTTACCAAGTTGATCAAGGGCGCCAATCACAAAATGTCAGGAGGACACTATCACGGGCAATATGGAGATGAAAGATTTTGGGATAGTCATTTCAATTTAGGGGACGAATTGACAGATATTGAGAAAGAAGAAATTGATTGTGCAATTGCACTCTCTCTGTCAGAGGAGGATCAGAAAGGGAAAAAAGTTATAAAGGATGACTCACAATCCGAAGATGATGAAGAACTTTGTAAAATTGAAGAGGAGGAGGATGAGCACCTTGCTAATGTTAGAGAAGAGGAAGATGGAGATCCTGTTAAAATTCAATCAGATGAAGATGATCATCCTACTAAAGTTCAACTTGAGGAAGATGAACAATTTGCCAGGGCATTGCAAGAAAGTTTGAATGTGGGTTCTCCTCCTCGACGTGACTCTGGTTCTTTATTGCAACCTTCTCCCCCCCTCTTTCCATCTGGAATCAGAATCTGTGGTGGCTGCAACACTGAAATTGGCCATGAAAGGTTTTTAAGTTGTATGGGTGCAGTATGGCATCCAGATTGTTTTCGCTGCCAGGCATGCAATCTGCCAATCACTGATTATGAGTTTTCCATGTCCAACAACAGCCCTTACCATAAATCCTGTTATCGGGAGCAGCATCATCCAAGATGTGATGTTTGCAAGAATTTTATCCCAACAAACTCAGCTGGCCTCATTGAGTACAGAGCGCATCCTTTCTGGCTACAAAAATATTGTCCATCACATGAACGTGACAGCACTCCTCGTTGTTGTAGCTGTGAAAGAATGGAGCCATGCGACACAAAATATCTTTTGCTCGATGATGGTCGAAAGCTATGTTTAGAGTGCCTGGACTCTGCTATCATGTTTACTCATGAATGCCAACCTCTTTACCTTGAAATTCAAGAATTTTATGAAGGTTTAAATATGAAAGTGGAGCAGCAAGTTCCTATGCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCTTGGAGGGAGAAAAGAATGCTCATCACCACTTGCCAGAAACTAGAGGACTATGCTTGTCAGAAGAGCAGACTATCGCCACTATTTCAAGGAGACCAAGGATAGGCGCAGGCTACCGGATCATAGACATGATAACCGAGCCTTACAAGTTGATTCGTCACTGTGAAGTGACTGCCATTCTTGTTTTGTATGGCCTTCCCAGGTTGTTAACAGGGTCAATCCTGGCTCATGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTATTCCAATCTGAGCCCAGAAGTTGAAGAAGGAATTTGCCAGGTCCTAGCTCATATGTGGTTAGATTCAGAGATCTATTCTGGATCTGGGAATGATGGGGCATCTTCTTCTTCACCATCATCGTCATCATCCTCTTCCACGTCATCAAAGAAGGGTAAACGATCTGACTTTGAGAAGAAACTTGGTGAGTTTTTTAAACACCAGATTGAGTCAGATACCTCATCAGCTTATGGAGAGGGATTCAGATTGGGTAACGAGGCTGTGCTTAAGTACGGGCTCAGAAGGACCCTTGACCATATCCAAATTACAGGAGGTTTTCCATAA 1575 0.4298 MGWFTKLIKGANHKMSGGHYHGQYGDERFWDSHFNLGDELTDIEKEEIDCAIALSLSEEDQKGKKVIKDDSQSEDDEELCKIEEEEDEHLANVREEEDGDPVKIQSDEDDHPTKVQLEEDEQFARALQESLNVGSPPRRDSGSLLQPSPPLFPSGIRICGGCNTEIGHERFLSCMGAVWHPDCFRCQACNLPITDYEFSMSNNSPYHKSCYREQHHPRCDVCKNFIPTNSAGLIEYRAHPFWLQKYCPSHERDSTPRCCSCERMEPCDTKYLLLDDGRKLCLECLDSAIMFTHECQPLYLEIQEFYEGLNMKVEQQVPMLLVERQALNEALEGEKNAHHHLPETRGLCLSEEQTIATISRRPRIGAGYRIIDMITEPYKLIRHCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYSNLSPEVEEGICQVLAHMWLDSEIYSGSGNDGASSSSPSSSSSSSTSSKKGKRSDFEKKLGEFFKHQIESDTSSAYGEGFRLGNEAVLKYGLRRTLDHIQITGGFP 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1616 524 ProSitePatterns LIM zinc-binding domain signature. 159 193 IPR001781 -
Bisa11g1616 524 MobiDBLite consensus disorder prediction 84 112 - -
Bisa11g1616 524 ProSiteProfiles LIM domain profile. 157 217 IPR001781 -
Bisa11g1616 524 Gene3D Cysteine Rich Protein 154 218 - -
Bisa11g1616 524 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 151 184 - -
Bisa11g1616 524 MobiDBLite consensus disorder prediction 448 467 - -
Bisa11g1616 524 Pfam LIM domain 159 214 IPR001781 -
Bisa11g1616 524 MobiDBLite consensus disorder prediction 94 112 - -
Bisa11g1616 524 MobiDBLite consensus disorder prediction 448 471 - -
Bisa11g1616 524 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 240 - -
Bisa11g1616 524 SMART lim_4 158 210 IPR001781 -
Bisa11g1616 524 PANTHER PROTEIN DA1-RELATED 2 3 524 IPR045218 -
Bisa11g1616 524 CDD LIM_DA1 159 211 - -
Bisa11g1616 524 SMART uim 43 62 IPR003903 -
Bisa11g1616 524 SMART uim 118 137 IPR003903 -
Bisa11g1616 524 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 118 137 IPR003903 -
Bisa11g1616 524 Pfam Protein DA1 308 519 IPR022087 -
Bisa11g1616 524 FunFam Protein DA1-related 1 153 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1616 Bisa-ChrBisa11 36971064 36975214 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bisa11g1616 DA1-like 9.5e-104 CL0126