Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1607 ATGGAAGTGCTTTCGTGTTCTGGTGTTCAATATGCTGGGGAATCTGATTGCCCTCAGCAGAGTTCAGGAACATCTTTTGTATACCAGGGAGGACCTCATTGTCCTGAAAATGGTGAACGAGTTGATTTGGAGGGTGGTCAACTGAATGGCTCACTACCCAAAACTGAAGGGCCTCAGATGGAAAGGCAAGGTGAAGGTCAAGAGACAGTTGGTGAACTGTCAGTTAATCCAGATTTGCAATGCAATGGAGCTTCATCTTGTGACTGTCAAGTAGTAGACCAAAAGGAATCTTCTGGTCTTGACGAGGATGAGATGGATGAACCTTGCTTAACCTCAGAGAACTCTATTTCCTTTGTGGATACAATTGAAAGTGAATCACCAAACAACAGTAGGGATGGGGAATTGCCACTTTCTGAACCTACTTGGTTAGAGGGGGATGAGTCTCTGGCATTGTGGGTCAAGTGGAGAGGGAAGTGGCAGGCTGGCATCAGATGTGCAAGGGCTGACTGGCCCTTATCAACTTTAAAAGCAAAACCGACTCATGACCGGAAGAAATATTTTGTGATTTTTTTTCCACACACAAGGAATTATTCTTGGGCTGATATGATGCTTGTTTGTTCAATCCATGAGTTTCCCCAGCCTATCGCATATAAGACCCATCAGCTAGGATTGAAAATGGTAAAAGATTTGACTGTTGCCCGACGGTTTATAATGCAAAAGCTAGCTGTTGGCATGCTGAACATTGTTGATCAAATTCATTTGGATGCTTTGATTGAAGCTGCCCGTGATGTGATGGTCTGGAAGGAGTTTGCTATGGAGGCTTCCCGTTGTAATCGTTATTCGGATCTTGGAAGAATGCTTCTAAAGTTGCAAAATAGCATAATGCAGCACCACATAAATGCTAACTGGTTACAGCATTCTTTTCACTCTTGGACTGAACGATGCCGGAATGCAAGTAGTGCTGAAATGGTAGAACTGCTGAAGGAGGAATTGTATGATTCTATATTGTGGAATGATATCAACACTCTTTGGGATGCTCCAGCGCAACCAACATTGGGTTCTGAGTGGAAAACCTGGAAGCATGAAGTGATGAAATGGTTTTTTGCATCTACTTCCTTATCTGGCGGCAAAGACATTCAGCAGCAGACCTCAGATGGCTCCTTCCAAGCAAGCCTTCAATGTATTCCTTGTGGTAGCCATTTTGGAAATACTGATCAGTTGTGGCATCATGTTCTGTCAGTTCATCCTGTTGATTTTAAAGCATCAAAATCTCCTGAGCAGCAAACTTTGTCAACTGGTGTGGACTCTTCAATAAAACTAGAGGCAGAGCAGGGGAATTCAACTGCTTTGGAGAATAATTCGGAGAATTCAGGTGGCTTGCGGAAATTTATTTGTAGGTTTTGTGGGTTAAAGTTTGACTTACTACCTGACCTTGGTCGCCATCATCAGGCTGCTCATATGGGTCCTAATTTAGTTAGCAGCCGTCCGTCAAAGAAGGGGGTTCGTTATTATGCATACAGATTAAAATCTGGCAGACTTAGTCGTCCTAGATTTAAAAAAGGTTTGGCTGCAGCATCTTACAGGATTAGAAGTAGAGCTAGTGCTAACTTAAAGAGACGCATTCAGGCAACGAAGTCGCTTGGCATGGGGGGAATAACTATTCAACCTCAAGTAACTGAGACAGCAAACATTGGTAGGTTGGCAGAATATCAATCCTCTGCTGTTGCAAAGATTTTATTTTCTGAGATCCAGAATACTAAACCTCGGCCAAACAATCTTGATATTTTATCAATTTCCCGCTCTGCTTGCTGCAAAGATAGTCTTAAAGCCTCACTGGAGGAGAAATTTGGAATTTTGCCTGAAAAGCTGTATCTGAAGGCTGCAAAACTTTGCAGTGAGCATAACATTCTAGTGAACTGGCACCAAGAAGGGTTTAATTGTCCTAGAGGTTGTAAGGCGCTGAAGGACCAACCAGTGCTTTCTCACTTAGCATCTCTTCCTAATGGTTTTGTAAAGCAAAAAACTTCAAATTTTTTAGATTCTGCAAGTGATGAGTGGGAGGTGGATGAGTTTCACTACATTGTCAATTCGCACCATTTAAAGCTAGGGTCCTTGCAAAAGGCTGCAGTCTTATGTGATGACATAAGCTTTGGAAAGGAATCAGTTCCAGTGATTTGTGTAGTAGATCAAGAACTTCTAAATTCTCTTCATATGTGTGGGTCTAGTGTACATGATATAAATCTCTCCATGCCTTGGGAGAGCTTTACCTATGTGACAAAGCCTATGCTTGATCAATCCCTTAGTCTTGATTCAGAGAGTCTGCAATTGGGATGTTCCTGCTCATATTCTACCTGCAGTCCTGAAACATGTGATCATGTATACCTTTTTGATAATGACTACGATGATGCGAGGGACATTTTTGGGAAACCAATGCGTGGCAGGTTCCCATATGATGAGAATGGTCGAATAATTTTGGAGGAAGGTTACCTAGTCTATGAATGCAACCATATGTGCAGATGTAATAAAACCTGTCCAAACAGAGTTTTGCAAAATGGAGTACGAGTTAAATTGGAAGTTTTTAAAACAGAGAAAAAGGGATGGGCAGTAAGAGCTGGTGAAGCTATCCTGCGTGGCACATTTGTATGCGAGTATGTTGGAGAGGTTTTAAATGAGCAGGAGGCACAGAATAGGCGCAAGAGGTACGGCAAAGAAGGTTGCAGTTATTTCTTTGATGTTGATGGTTATATCAATGATATGAGCAGATTGATTGAAGGAGAGGCTCGATATGTTATAGATGCTTCTAGATATGGAAATGTGTCAAGGTTCATTAATCACAGCTGCTCGCCCAATCTTGTGAATCACCAAGTTCTTGTAGAAAGCATGGACTGTGAACGTACACATATTGGTCTTTATGCAAGTAGAGATATTGCTTTGGGTGAAGAACTGACTTATGGTTATCATTATGAGCTTGTGCCTGGGGAAGGATCTCGTTGCCTCTGTGGATCTTCAAAGTGCCGGGGACGCCTTCATTGA 3033 0.4224 MEVLSCSGVQYAGESDCPQQSSGTSFVYQGGPHCPENGERVDLEGGQLNGSLPKTEGPQMERQGEGQETVGELSVNPDLQCNGASSCDCQVVDQKESSGLDEDEMDEPCLTSENSISFVDTIESESPNNSRDGELPLSEPTWLEGDESLALWVKWRGKWQAGIRCARADWPLSTLKAKPTHDRKKYFVIFFPHTRNYSWADMMLVCSIHEFPQPIAYKTHQLGLKMVKDLTVARRFIMQKLAVGMLNIVDQIHLDALIEAARDVMVWKEFAMEASRCNRYSDLGRMLLKLQNSIMQHHINANWLQHSFHSWTERCRNASSAEMVELLKEELYDSILWNDINTLWDAPAQPTLGSEWKTWKHEVMKWFFASTSLSGGKDIQQQTSDGSFQASLQCIPCGSHFGNTDQLWHHVLSVHPVDFKASKSPEQQTLSTGVDSSIKLEAEQGNSTALENNSENSGGLRKFICRFCGLKFDLLPDLGRHHQAAHMGPNLVSSRPSKKGVRYYAYRLKSGRLSRPRFKKGLAAASYRIRSRASANLKRRIQATKSLGMGGITIQPQVTETANIGRLAEYQSSAVAKILFSEIQNTKPRPNNLDILSISRSACCKDSLKASLEEKFGILPEKLYLKAAKLCSEHNILVNWHQEGFNCPRGCKALKDQPVLSHLASLPNGFVKQKTSNFLDSASDEWEVDEFHYIVNSHHLKLGSLQKAAVLCDDISFGKESVPVICVVDQELLNSLHMCGSSVHDINLSMPWESFTYVTKPMLDQSLSLDSESLQLGCSCSYSTCSPETCDHVYLFDNDYDDARDIFGKPMRGRFPYDENGRIILEEGYLVYECNHMCRCNKTCPNRVLQNGVRVKLEVFKTEKKGWAVRAGEAILRGTFVCEYVGEVLNEQEAQNRRKRYGKEGCSYFFDVDGYINDMSRLIEGEARYVIDASRYGNVSRFINHSCSPNLVNHQVLVESMDCERTHIGLYASRDIALGEELTYGYHYELVPGEGSRCLCGSSKCRGRLH 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1607 1010 ProSitePatterns Zinc finger C2H2 type domain signature. 394 415 IPR013087 -
Bisa11g1607 1010 ProSiteProfiles SET domain profile. 855 987 IPR001214 GO:0005515
Bisa11g1607 1010 ProSiteProfiles Pre-SET domain profile. 776 852 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Bisa11g1607 1010 SMART set_7 855 993 IPR001214 GO:0005515
Bisa11g1607 1010 Gene3D SET domain 692 991 IPR046341 -
Bisa11g1607 1010 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 393 - -
Bisa11g1607 1010 ProSitePatterns Zinc finger C2H2 type domain signature. 465 486 IPR013087 -
Bisa11g1607 1010 ProSiteProfiles Zinc finger C2H2 type domain profile. 463 491 IPR013087 -
Bisa11g1607 1010 SMART preset_2 712 839 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Bisa11g1607 1010 Pfam Pre-SET motif 715 847 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Bisa11g1607 1010 Pfam Zinc finger C2H2-type, 3 repeats 392 487 IPR040689 -
Bisa11g1607 1010 SUPERFAMILY SET domain 704 1000 IPR046341 -
Bisa11g1607 1010 SMART c2h2final6 392 415 IPR013087 -
Bisa11g1607 1010 SMART c2h2final6 463 486 IPR013087 -
Bisa11g1607 1010 MobiDBLite consensus disorder prediction 12 28 - -
Bisa11g1607 1010 ProSiteProfiles Post-SET domain profile. 994 1010 IPR003616 -
Bisa11g1607 1010 Pfam SET domain 866 986 IPR001214 GO:0005515
Bisa11g1607 1010 MobiDBLite consensus disorder prediction 12 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1607 Bisa-ChrBisa11 36884580 36899476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1607 92 393 C2H2 Transcription Factor Family AT2G23740 55.116 1.17e-102 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bisa11g1607 Pre-SET 9.9e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1607 11 36884580 36899476 Bisa11g1607 11 36884580 36899476 ECH