Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1518 ATGTCGCAGAGATCGGTGCCGGCGCCGTTTCTGACGAAGACGTACCAGCTGGTGGATGATCCGGCCACCGATGACGTCATATCGTGGAGTGAGAGCGGGAACACGTTTGTTGTGTGGAAGCACGCGGATTTCGCCAAGGATTTGCTTCCCAATTACTTCAAGCACAACAACTTCTCCAGCTTTGTTCGCCAGCTCAATACCTACGGATTTCGAAAGATTGTTCCCGACAAATGGGAATTCGCGAACGAATATTTCAAGCGAGGACAGAAGGAGCTGCTGGCAGAGATCAAACGCCGGAAAACTCTGACCCAATCCTCCGCGCAGGCCCCCGCCGCCGGACAATCGGGCGGGGGCTGTAACTCTGCGTCGAACTCGGGCGGCGATGACATGGGGTCGACCTCGACTTCGTCCCCTGATTCGAAGAATCCGGGAACTGTGGAGACGACGACCCCCCAAATCGCAAACCTATCGGGGGAGAACGAGAAACTGAGGAAGGACAACGAGGCGCTGAGCTGGGAACTAGCCCAGGCGAAGAAGCAGTGCGATGAGCTGATCGGTTTTCTGAAAGAGTATCTGAAGGTGGAACCCGATCAGATCCATCGCATCATGCGGCAAGGAAGTTGTGGGTCCAGCCGCAACCATGGTGATGATGACGACGAAAACGCTGTCGTAGGAGCAGAAGAAGGGGAAGGTGGGGAAAGCTTGAAACTCTTTGGGGTTTGGTTGAAAGGAGAGACCGAGAACGATATTCAGAAGGGGAAGAAGAAGATGGGCTCCACCACCTGCAACAAGAGAGGGCGCGAAGACCAAATGAGTTTTAGTGGGCCTCACGCAAAGGAGTTGAAAGCTGTTGATTTTAGTGCTTCTGTGATGATGAAGAGCAGCAAAGTCTGCAACTGA 900 0.5378 MSQRSVPAPFLTKTYQLVDDPATDDVISWSESGNTFVVWKHADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGQKELLAEIKRRKTLTQSSAQAPAAGQSGGGCNSASNSGGDDMGSTSTSSPDSKNPGTVETTTPQIANLSGENEKLRKDNEALSWELAQAKKQCDELIGFLKEYLKVEPDQIHRIMRQGSCGSSRNHGDDDDENAVVGAEEGEGGESLKLFGVWLKGETENDIQKGKKKMGSTTCNKRGREDQMSFSGPHAKELKAVDFSASVMMKSSKVCN 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1518 299 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Bisa11g1518 299 MobiDBLite consensus disorder prediction 249 276 - -
Bisa11g1518 299 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 215 IPR027725 -
Bisa11g1518 299 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bisa11g1518 299 Gene3D - 2 101 IPR036388 -
Bisa11g1518 299 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bisa11g1518 299 MobiDBLite consensus disorder prediction 104 157 - -
Bisa11g1518 299 MobiDBLite consensus disorder prediction 104 162 - -
Bisa11g1518 299 FunFam Heat stress transcription factor B-4 2 100 - -
Bisa11g1518 299 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bisa11g1518 299 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bisa11g1518 299 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Bisa11g1518 299 Coils Coil 153 180 - -
Bisa11g1518 299 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1518 Bisa-ChrBisa11 35372598 35374638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1518 2 299 HSF AT4G36990 52.941 3.87e-91 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Bisa11g1518 HSF_DNA-bind 2.1e-33 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1518 11 35372598 35374638 Bisa01g1981 01 34903330 34906252 CCT
Bisa11g1518 11 35372598 35374638 Bisa11g1518 11 35372598 35374638 ECH