Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1466 ATGGACGGTGAAGTGGGAGGGGGAACGGAGAGGGAGATACCCTCGAGAAAGAGGGGGTTGGCAGAAGGAGAGAGAAGATACAAAGGGATAAGGATGAGGAAGTGGGGCAAGTGGGTCGCTGAGATTCGAGAACCCAATAAGCGCTCCAGGATTTGGCTCGGCTCCTATTCGACGCCGGTCGCGGCGGCGCGGGCTTACGACACGGCGGTTTTCTACCTCAGAGGACCATCCGCCCGGCTAAACTTCCCGGAGCTTCTAGAGGGGGGCGGCGGTGGCGGAGGAGGAGACATGTCGGCGGCTTCGATTAGGAAGAAAGCGACGGAGGTCGGTGCGAGAGTCGATGCGCTTCAGGCGGCTCTCCACCATCATCACCACCACTCCACGGCGGCGCCCGAGCTCATCTCGCGTGGCGCCGGCGCCGGGGAGTTCGTGGAGCGGGTTGATCTTAATAAGATACCCGAACCTGAGGATTCAGACTGCGAGTGGGATAGGAATTAG 498 0.6064 MDGEVGGGTEREIPSRKRGLAEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLEGGGGGGGGDMSAASIRKKATEVGARVDALQAALHHHHHHSTAAPELISRGAGAGEFVERVDLNKIPEPEDSDCEWDRN 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1466 165 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Bisa11g1466 165 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Bisa11g1466 165 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Bisa11g1466 165 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Bisa11g1466 165 MobiDBLite consensus disorder prediction 1 20 - -
Bisa11g1466 165 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Bisa11g1466 165 CDD AP2 26 85 IPR001471 GO:0003700|GO:0006355
Bisa11g1466 165 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Bisa11g1466 165 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Bisa11g1466 165 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 17 159 - -
Bisa11g1466 165 FunFam Ethylene-responsive transcription factor 2 25 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1466 Bisa-ChrBisa11 34540571 34541068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1466 13 163 AP2-EREBP Transcription Factor Family AT2G23340 65.823 1.14e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bisa11g1466 AP2 1.1e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1466 11 34540571 34541068 Bisa01g2008 01 35443813 35444286 CCT
Bisa11g1466 11 34540571 34541068 Bisa11g1466 11 34540571 34541068 ECH