Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1351 ATGGAGGTGTTCCGGGAATTGGGGGTTATCAAAAGCTTCAATCAGGACGCTAAACTGCTTTTAATGGGAGCTCCAAAGCAAAAATGGACTGCAGAAGAAGAAGCAGCATTGAAAGCTGGAGTAGTCAAACATGGGGCAGGAAAGTGGCGCACTATACTTACAGACCCAGAATTCAGTTCTATTTTGCGCATGCGTTCAAATGTAGATCTGAAGGATAAATGGAGGAATATAAATGTGACCGCAATATGGGGATCCAGGCAGAAGGCAAAACTGGCATTTAAAAGGAACCTACCAACCCCCAAAAATGATAACAATCATATGGCCTTGAGTACTGTAGTTCAACACGATGAAGTTCTTGATACTAAGCCTCTAGCAGTTTCTGGTGGAATGTTGCAGTCTGCTAATTCAAAAGATCATATATCTAGGTTGGATAATCTTATATTAGAGGCTATTATCAATTTGAAGGAACCAAAGGGTTCTGACAGGGCTTCCATTGCTGCTTATATTGAGGAGCAATACTGTTCTCCACCAAACCTCAGAAAGTTATTGTCAACAAAACTGAAGCATATGGTAGCAATTGGCAAATTGACGAAGGTAAAACATAAGTACAGGATCACACCAAGCTCAGCAATCACTGAGAAAAGAAGATGCTCAAACTTGTTACCCCTGGAAGGGAGGCCCAAGGATACTCCTAAAGCAGAAAAGACCAACGTCAACATCCTTTCAAAGTCCCAGATTGATGCAGAGCTATCAAAAATGAAGGGCGTGACAGCCCAGGAAGCTGCTGCAGCTGCTGCAAAAGCAGTTGCAGAGGCAGAAGCTGCCATTGCTGAGGCAGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGATGCTGCGCAAGTGTTTGCCAAAGCGGCAATGAGAGCACTAAAGTGCAGAACACTTCAAATTTGATGTTATGAACTTCGGGCAGCATGGTCATTAGCAGCATTTTTGCTCGAGACTCTAGTTCCTCCTTTACTTCTGCTGCCTGTATTTCGTAACTGTACATAA 1044 0.4397 MEVFRELGVIKSFNQDAKLLLMGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLAFKRNLPTPKNDNNHMALSTVVQHDEVLDTKPLAVSGGMLQSANSKDHISRLDNLILEAIINLKEPKGSDRASIAAYIEEQYCSPPNLRKLLSTKLKHMVAIGKLTKVKHKYRITPSSAITEKRRCSNLLPLEGRPKDTPKAEKTNVNILSKSQIDAELSKMKGVTAQEAAAAAAKAVAEAEAAIAEAEAAAREAEAAEAEADAAQVFAKAAMRALKCRTLQIXCYELRAAWSLAAFLLETLVPPLLLLPVFRNCT 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1351 347 CDD H15 145 216 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa11g1351 347 SMART sant 25 80 IPR001005 -
Bisa11g1351 347 SUPERFAMILY "Winged helix" DNA-binding domain 139 216 IPR036390 -
Bisa11g1351 347 Coils Coil 262 296 - -
Bisa11g1351 347 Gene3D - 23 80 - -
Bisa11g1351 347 FunFam Telomere repeat-binding factor 1 23 79 - -
Bisa11g1351 347 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 138 207 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa11g1351 347 PANTHER SINGLE MYB HISTONE 4 22 310 IPR044597 GO:0003691
Bisa11g1351 347 SMART h15plus2 136 202 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa11g1351 347 SUPERFAMILY Homeodomain-like 23 88 IPR009057 -
Bisa11g1351 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 82 IPR017930 -
Bisa11g1351 347 Pfam Myb-like DNA-binding domain 26 77 IPR001005 -
Bisa11g1351 347 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Bisa11g1351 347 CDD SANT_TRF 27 78 - -
Bisa11g1351 347 Pfam linker histone H1 and H5 family 144 201 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa11g1351 347 Gene3D - 135 216 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1351 Bisa-ChrBisa11 32825491 32831247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1351 22 310 Single Myb Histone (SMH) Gene Family AT5G67580 58.362 1.60e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Bisa11g1351 Linker_histone 4.7e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g1351 11 32825491 32831247 Bisa01g2106 01 37204358 37208640 CCT