Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa11g1342 ATGAGTAAAGAAGGTGGAGTAGTGTGTGATGAGTCTGATGACTGCACGTCCATTTCGGGTGGGTTTCGTTCTCTGCTTTGCATTTTCCGAGTAGTTCTTTCTCTAAAAAGGGGTTTCAAAATGCCGATGTATCAGCCTTCTAAGCGAGATGTGGTTGCTAGGTTCGAGGGCGGCGGTGACGGCCAGATTCTAGATCTGGATACCGCCGTCAAAGATGGGGTTCTAGGTGGTGTTGACGGTGGGGTTGTGGGAGTTGGGGGTGGTGAGAAATTGGATCTGAAGAAGATGATTCAAGAGCTCGACCTGTCCGAAGTTCCTTCAGTGTTCATCTGTCCAATCTCCCTTGAACCAATGCAAGACCCAGTCACACTCTGCACCGGCCAAACCTACGAGAGGTCCAACATTCTCAAATGGTTCAATTTGGGGCACTTCACCTGCCCTACCACGATGCAAGAGCTCTGGGACGATTCCGTCACTCCAAATACGACGCTCTACCGTCTCATTTACACTTGGTTCTCTCAGAAGTACCTTCTGATGAAGAAGAGATCAGAAGATGTGCAGGGGAGGGCCTCAGAGCTTCTGGAGACGCTGAAGAAGGTGAAGGGTCAAGCTCGAGTTCAGGCCTTGAAGGAGCTTCATCAAGTGGTAGCTGCTCATGCTACTGCCCGCAAGACAGTCATTGATGAAGGTGGTGTCTCTGTAATGTCTTCCTTACTTGGACCTTTTACTTCCCATGCTGTTGGCTCCGAGGTCATTGGTATTCTTGTGAGTTTGTCTCTTGATTCTGAATCAAAGAAGGATTTAATGCAACCTGCAAAGCTTTCTTTAATGGTGGACATTTTGAACGAGGGTTCAATTGAGACCAAAATCAATTGCACCCGACTGATTGAATCATTAATTGAGGAGAAGGATATCCGGTCAGAGATTATCTCAAGCCATAGCCTTTTGGTTGGGCTGATGAGGCTCGTGAAAGATAAGAGACACTCAAACGGAAATTTTCCTGGGCTTAGCCTCCTCAGAACATTATGCTTGCATAAAGAAGTTAGGAATTTGCTAGTTAGTATTGGAGCTGTTTCTCAGTTGGTTGAATTGTTATCTGGTCTGGAGCCTGAGTGTTCTGAATTGGCGCTTTCCATTTTAGATGCATTGACATCGATACCCGAAGGCAGAGTAGCTCTGAAAAATTGTTCTAACACTATTCCCATTATGGTGAACCATTTGATGAGGATCTCAGAGAGCTGCACTCAATATGCATTGTCTATCCTATGGTCTGTGTGCAAGCTTTCGCCTGAGGAGTGCTCATCCGTAGCTCTTGATGCAGGACTTGCTGCAAAACTCCTCCTTGTGATACAAAGTGGTTGTAATCCTATTTTGAAACAACAGTCTGCTGAGCTTTTGAAGCTGTGTAGTTTAAATTATTCAGATACCATCTTCATTTCCAAGTGCAAGCTTACTAGAACCATCCAATGA 1470 0.4565 MSKEGGVVCDESDDCTSISGGFRSLLCIFRVVLSLKRGFKMPMYQPSKRDVVARFEGGGDGQILDLDTAVKDGVLGGVDGGVVGVGGGEKLDLKKMIQELDLSEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHFTCPTTMQELWDDSVTPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELLETLKKVKGQARVQALKELHQVVAAHATARKTVIDEGGVSVMSSLLGPFTSHAVGSEVIGILVSLSLDSESKKDLMQPAKLSLMVDILNEGSIETKINCTRLIESLIEEKDIRSEIISSHSLLVGLMRLVKDKRHSNGNFPGLSLLRTLCLHKEVRNLLVSIGAVSQLVELLSGLEPECSELALSILDALTSIPEGRVALKNCSNTIPIMVNHLMRISESCTQYALSILWSVCKLSPEECSSVALDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa11g1342 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 177 IPR013083 -
Bisa11g1342 489 SUPERFAMILY RING/U-box 100 175 - -
Bisa11g1342 489 Gene3D - 178 479 IPR011989 -
Bisa11g1342 489 SUPERFAMILY ARM repeat 192 473 IPR016024 -
Bisa11g1342 489 PANTHER WDSAM1 PROTEIN 101 475 IPR045185 GO:0061630
Bisa11g1342 489 SMART Ubox_2 108 171 IPR003613 GO:0004842|GO:0016567
Bisa11g1342 489 ProSiteProfiles U-box domain profile. 104 178 IPR003613 GO:0004842|GO:0016567
Bisa11g1342 489 CDD RING-Ubox_PUB 106 158 IPR045210 -
Bisa11g1342 489 Pfam U-box domain 105 175 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa11g1342 Bisa-ChrBisa11 32752501 32754743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa11g1342 41 489 U-box Gene Family AT3G49810 75.278 0.0 671